Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2433 ATGGCATCATCAAGCTCATACAATTCACCATGTGCAGCCTGCAAATTCCTTCGTCGAAAATGCATGCCAGGCTGCATCTTTGCACCATACTTTCCACCGGAAGAACCTCAAAAATTTGCAAACGTTCACAAGATCTTCGGCGCAAGCAACGTCACAAAGATCCTCAACGAACTCCTCCCTCACCAGAGAGAAGATGCAGTGAATTCCCTTGCTTATGAAGCCGAGGCACGTGTGAGAGATCCTGTTTATGGTTGTGTTGGTGCTATCTCTTTCCTTCAGAGACAAGTTCAGAGACTTCAAAAGGAACTTGATTCTGCTAATGCCGATCTTCTTCGCTTTGCTTACAATGAAATCTCTCCGAATTCCTCTCTTCCACCTCTTCCTCCTCTTGTTGTTCCGGCTTCGTTTCATCAATCTCAAAGACAGTTTAGTTCAAGATTTGGTAATGGAAATGTTGATGGAAATGGATTTTACTCTTCTTTTCCTTATGCTATTCCATGGATTAATGATACCTCTTCTGAGGATATAAGTGGAGGTGTAGGTGGAAGAGGAGGAGGTGTAGGAGGAGGTAATTTGTGA 579 0.4352 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRFAYNEISPNSSLPPLPPLVVPASFHQSQRQFSSRFGNGNVDGNGFYSSFPYAIPWINDTSSEDISGGVGGRGGGVGGGNL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2433 192 Coils Coil 89 109 - -
Mtr3g2433 192 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Mtr3g2433 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 180 - -
Mtr3g2433 192 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Mtr3g2433 192 PANTHER ELONGATED PETIOLULE 1 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2433 Mtr-Chr3 38164085 38166498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2433 1 130 AS2 family AT5G63090 75.000 7.27e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr3g2433 LOB 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2433 - - gmx:100803667 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3780 4 51551911 51554047 Mtr3g2433 3 38164085 38166498 ECH
Mtr3g2433 3 38164085 38166498 Mtr3g2433 3 38164085 38166498 ECH
Mtr4g3780 4 51551911 51554047 Mtr3g2433 3 38164085 38166498 PCT