Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2429 ATGGGTCGCCATTTTTGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTTTTCAATTACATAACCATGTTTGGTGTCGGATGTTGGAGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGATGTGGAAAGAGTTGTAGATTGAGATGGATCAACTATCTGAGACCTGATTTGAAGAGAGGAATGTTCTCAAAACAAGAGGAAGATCTTATTATCAATCTTCATGAAGCACTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCAGGTAGAACGGATAATGAGATTAAAAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACACATAAACCCTTCATCAATAATATTGAATCTCTTATAAAGGAAGAGAAGGAAAAACCATCAATGATAATGCCACTGTCTCACTCTCAACCTCAAAGAATTCTAGCTACACACACAATGCTAGAATCCTCACATGACTACTCAGAATCCCTTCTAATGAGTGATTTGATTAATCACTATAATATTGGTGGATTAGCTTTAACAGAAGCTTCAAGAATATTTCTTATGAATAATCCAACATTGGATTTTGATCCATTATACTACAATTCAAGTTTGATAAATTATTATCAGCCAAGTCTATTACAATTTGAACAGAATCAGTTTGGAAACAATTCAAGCTATTTCTTCTCTTCAATGCCTTGTCTAAATAGTTCAGAATTTTCAGACAACATCAACAACTCAGTTTCAAAATTTAGTTCTCCTTTGGTGAATGAAAGTTCAAGCAATAGTACTTCAACCATGAGTGATTATTATCAAATTAGCAACATGATTAATGAAAATGCAGGTGGATTAATCTCATGGGAAGGTGAAGAATTCATCAACAAGACAAGTTCATGGCAAGAAGGACAGTTGCTGAGTCATAATAATTCAATAGATTTCAGTACATATCCTTTAACGTCACTGTCAGAAGATCTAAGTAATATTGAAGCTAATTTTGATGTATTTCACCATTTATGA 1050 0.339 MGRHFCSLKQKLRKGLWSPEEDEKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSKQEEDLIINLHEALGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKPFINNIESLIKEEKEKPSMIMPLSHSQPQRILATHTMLESSHDYSESLLMSDLINHYNIGGLALTEASRIFLMNNPTLDFDPLYYNSSLINYYQPSLLQFEQNQFGNNSSYFFSSMPCLNSSEFSDNINNSVSKFSSPLVNESSSNSTSTMSDYYQISNMINENAGGLISWEGEEFINKTSSWQEGQLLSHNNSIDFSTYPLTSLSEDLSNIEANFDVFHHL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2429 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mtr3g2429 349 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Mtr3g2429 349 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr3g2429 349 CDD SANT 17 61 IPR001005 -
Mtr3g2429 349 CDD SANT 70 112 IPR001005 -
Mtr3g2429 349 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr3g2429 349 SMART sant 13 63 IPR001005 -
Mtr3g2429 349 SMART sant 66 114 IPR001005 -
Mtr3g2429 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mtr3g2429 349 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr3g2429 349 Gene3D - 68 143 - -
Mtr3g2429 349 PANTHER MYB DOMAIN PROTEIN 55 1 342 - -
Mtr3g2429 349 PANTHER MYB TRANSCRIPTION FACTOR 1 342 - -
Mtr3g2429 349 Gene3D - 11 67 - -
Mtr3g2429 349 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2429 Mtr-Chr3 38115871 38117464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2429 1 135 MYB Transcription Factor Family AT1G57560 77.778 9.39e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g2429 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2429 K09422 - tcc:18603988 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2429 3 38115871 38117464 Mtr3g2429 3 38115871 38117464 ECH
Mtr4g3778 4 51529278 51531324 Mtr3g2429 3 38115871 38117464 PCT