Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2418 ATGAGTAGTAGTTCTCCTAGTCCAATGGAGACGGAGCAAAACCCTACGACCGACCAAAACGGCGCCGTAGCTTCCCAACGTTCACCTCTACCACCATCTCCCCCTCCTCCTCTTCCACCGGAGGATAAAATTCTCGTCCCTGTCGAGGTTTGCTTAAAACCTTCCAGCACAGCTTCCATTCACGATGTTCGTTCCGCCGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAATGGTGGACCGATTCCTGTTCCCCTTGACGAACCCTTTCTTGCAGATAATGTGCAAAGAATTTGCGTTTGTGATACAGGTGAAGGGATGCAGAATGATAACGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTCAGCTTAGCGAAGAAGGACCGTGTGAGGATATCAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCCTAATATATGAATCTGGTCTAAAGCAAAGGTTGCTACGGTATGCAGCGAGTGCTTTGCTCTTCACTGAAAAGGCAGTTGACCCATTCCTTGTTTCATGGAACCGCATAATTCTTTTGCATGGACCCCCTGGGACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAACTGTCAATTCGATTCAATTCAAGATTCCCACAGGCTCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGCGGAAAGCTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAGGCAATCTGGTATTTGTTTTGATCGATGAAGTCGAAAGTCTTGCTGCTGCCAGAAAAGCTGCTTTGTCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTATTAACTCAGATGGATAAGTTAAAATCATCTCCAAATGTTATAATTCTAACAACATCCAACATCACTGCTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGCCCACCAACTCTTCAAGCCCGGTATGAAATATTAAGGTCTTGTGTGCAGGAACTTATGCGTACAGGGATATTAACTAATTTTGAGGATTGTAAGAATATCATGCTGCCAAATTACGCTAGTGCAAAACAGAGAATGAACGCACCAGATTTTCATGAAGCTACTACATTCATGCAACTGTGCAAGAAACTAGTTGAAACTGCAGAGGCATGCGAGGGAATGAGTGGAAGGTCTCTCAGAAAGCTTCCGTTTTTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAACCCTATCAAGTTCTTATGTACAATGATAGATACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1386 0.4329 MSSSSPSPMETEQNPTTDQNGAVASQRSPLPPSPPPPLPPEDKILVPVEVCLKPSSTASIHDVRSAVEGMLEKRSLSYNGGPIPVPLDEPFLADNVQRICVCDTGEGMQNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKAVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRFPQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEEGNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCVQELMRTGILTNFEDCKNIMLPNYASAKQRMNAPDFHEATTFMQLCKKLVETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCTMIDTAKRERSELPD* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2418 461 MobiDBLite consensus disorder prediction 28 43 - -
Mtr3g2418 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 429 IPR027417 -
Mtr3g2418 461 CDD AAA 197 345 - -
Mtr3g2418 461 ProSitePatterns AAA-protein family signature. 317 336 IPR003960 GO:0005524|GO:0016887
Mtr3g2418 461 MobiDBLite consensus disorder prediction 1 27 - -
Mtr3g2418 461 MobiDBLite consensus disorder prediction 1 43 - -
Mtr3g2418 461 Gene3D - 138 363 IPR027417 -
Mtr3g2418 461 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 199 217 IPR001270 GO:0005524
Mtr3g2418 461 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 313 327 IPR001270 GO:0005524
Mtr3g2418 461 SMART AAA_5 195 347 IPR003593 -
Mtr3g2418 461 Pfam ATPase family associated with various cellular activities (AAA) 199 344 IPR003959 GO:0005524|GO:0016887
Mtr3g2418 461 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 40 458 IPR044539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2418 Mtr-Chr3 38026420 38032370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2418 144 356 Calmodulin-binding Proteins AT3G56690 30.734 1.34e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2418 K22399 - gmx:100795009 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2418 3 38026420 38032370 Mtr3g2418 3 38026420 38032370 ECH