Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2402 ATGTCTATCACTTCCACCACTCCACTCTTCAAATCCCTAACCATGGCCGAATCCTGCCTCCTCTCATCCCAATCCAAATCCAAACCTACCTTCTTTTCCCTTCCCTCCAAATCCCTCAATCTCCATCTCTCCCTCAAAACCAACCGCTCAATCTCAATCTCTCCCTCTCCCTTATTCGTTGCTCAAGAAGGCGACACACTCACCACTTCTCTAGACGAAGAAGCTGGATTGAGTCTCGATTGGGAGCCCACTGCTGACGCTGCTGAAACTGAAACCGGCGCTGATGATTCTGCTGAAGGTTATTTTGTTGAACCACCGGAGGACGCAAAATTGTTTGTTGGAAATTTTCCTTTTGATGTTGATAGTGAGAAATTGGCCATGCTTTTTGGACAAGCCGGAACCGTTGAGATTGCTGAGGTTATTTATAACAGACAAACTGACCTGAGTCGTGGTTTTGGCTTTGTAACTATGAGTACCGTTGAAGAAGCCGAGTCTGCTGTCGAGAAGTTTAACGGCTATGATTACAATGGAAGATCATTGGTTGTTAACAAGGCTTCTCCTAAAGGATCTCGGCCTGAGCGTACTGAGCGTGCACCTCGTACTTTTGAACCTGTCCTAAGAATTTATGTTGCTAACTTGGCATGGGAAGTTGATAACAGTAGGCTCGAGCAAGTTTTCAGTGAACATGGCAAGATTGTGAGTGCTCGAGTAGTCTATGATAGAGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAAACTGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGAGGGTAGGACAATAAGAGTCAGCGTTGCCGAAGACAGGCCCAGACGCGGCTCCTTTTGA 876 0.4635 MSITSTTPLFKSLTMAESCLLSSQSKSKPTFFSLPSKSLNLHLSLKTNRSISISPSPLFVAQEGDTLTTSLDEEAGLSLDWEPTADAAETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRPRRGSF* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2402 291 Gene3D - 70 194 IPR012677 -
Mtr3g2402 291 Gene3D - 195 291 IPR012677 -
Mtr3g2402 291 SMART rrm1_1 207 280 IPR000504 GO:0003723
Mtr3g2402 291 SMART rrm1_1 110 183 IPR000504 GO:0003723
Mtr3g2402 291 PANTHER OS02G0815200 PROTEIN 3 83 - -
Mtr3g2402 291 PANTHER OS02G0815200 PROTEIN 94 291 - -
Mtr3g2402 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Mtr3g2402 291 CDD RRM_HP0827_like 110 187 - -
Mtr3g2402 291 SUPERFAMILY RNA-binding domain, RBD 105 198 IPR035979 GO:0003676
Mtr3g2402 291 CDD RRM_HP0827_like 207 283 - -
Mtr3g2402 291 PANTHER RIBONUCLEOPROTEIN 3 83 - -
Mtr3g2402 291 PANTHER RIBONUCLEOPROTEIN 94 291 - -
Mtr3g2402 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Mtr3g2402 291 SUPERFAMILY RNA-binding domain, RBD 201 289 IPR035979 GO:0003676
Mtr3g2402 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 180 IPR000504 GO:0003723
Mtr3g2402 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 278 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2402 Mtr-Chr3 37869283 37871756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2402 111 288 Eukaryotic Initiation Factors Gene Family AT3G16380 36.842 4.28e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2402 - - gmx:100810381 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3744 4 51191336 51193939 Mtr3g2402 3 37869283 37871756 ECH
Mtr3g2402 3 37869283 37871756 Mtr3g2402 3 37869283 37871756 ECH
Mtr4g3744 4 51191336 51193939 Mtr3g2402 3 37869283 37871756 PCT