Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2391 ATGACAAACACACCTTTCTCTTTGGTTTTATTGTTCTTCTCTTTTTTCATGCCTACCCTCATTTCCTCTTCACTTGTTCAAAATCCTGAATTGGTAGTCCAAGAGGTAAACAGGAAAATCAATGCCTCTTCAGCTAGGAGGAATTTAGGTTACCTATCCTGTGGGAGTGGAAACCCAATAGATGATTGCTGGAGGTGTGACTCCAATTGGGAAAAGAATAGGCAAAGGCTAGCAGATTGTGCAATTGGGTTCGGCAAGAATGCCATTGGTGGAAAGAACGGTAAGATTTACGTTGTAACCGATGCGAGCGATGACAATCCGGTGACCCCAAAGCCTGGAACACTCCGCCACGCCGTGATCCAAGTGGAACCGTTATGGATAATTTTTGCCAGAGACATGGTGATCAAATTAAAAGAAGAGTTAATAATGAACTCTTTCAAAACAATTGATGGTAGAGGAGCTAGTGTGCACATTGCTGGTGGTCCATGCATTACTATACAATATGTCACAAACATTATTATCCATGGGATACATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGACATTTCGGGTGGAGGACTATATCGGACGGTGATGGAGTGTCTATCTTTGGTGGAAGTCATGTTTGGGTTGATCATTGTTCTTTGTCTAATTGTGAAGATGGTTTGATTGATGCTATTTATGGTTCTACCGCTATAACGATCTCTAACAATTACATGACACACCATGATAAGGTCATGTTGTTAGGTCATAGCGACTCTTATACTCATGATAAGAACATGCAAGTCACAATTGCTTTTAACCACTTTGGTGAAGGACTCGTTCAAAGAATGCCAAGGTGTAGGCTTGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCTATTGGAGGAAGTGCAAATCCAACCATTAACAGTCAAGGAAACAGATTTGTTGCACCTAATAACAGATTCAGCAAAGAGGTGACAAAGTATGAAGATGCAGCAGAGAGTGAATGGAAGCATTGGAATTGGAGGTCAGAAGGAGACTTAATGGTAAATGGTGCATTTTTCACTAAATCAGGTGGTGGAGCATCATCTAGCTATGCAAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCTATTGTTGGTTCCATTACAATTGGTGCTGGAACACTTAATTGTAAGAAAGGTTCTCCTTGCTAG 1221 0.4128 MTNTPFSLVLLFFSFFMPTLISSSLVQNPELVVQEVNRKINASSARRNLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDASDDNPVTPKPGTLRHAVIQVEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIYGSTAITISNNYMTHHDKVMLLGHSDSYTHDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNNRFSKEVTKYEDAAESEWKHWNWRSEGDLMVNGAFFTKSGGGASSSYARASSLSARPSSIVGSITIGAGTLNCKKGSPC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2391 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Mtr3g2391 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Mtr3g2391 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Mtr3g2391 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Mtr3g2391 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Mtr3g2391 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Mtr3g2391 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Mtr3g2391 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Mtr3g2391 406 SUPERFAMILY Pectin lyase-like 35 388 IPR011050 -
Mtr3g2391 406 PANTHER PECTATE LYASE 18-RELATED 11 403 IPR045032 GO:0030570
Mtr3g2391 406 Pfam Pectate lyase 139 323 IPR002022 -
Mtr3g2391 406 PANTHER PECTATE LYASE 11 403 - -
Mtr3g2391 406 Gene3D - 57 399 IPR012334 -
Mtr3g2391 406 SMART amb_all 132 329 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2391 Mtr-Chr3 37777507 37780146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2391 1 406 Polysaccharide Lyase AT5G63180 77.506 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2391 K01728 - gmx:100779940 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3735 4 51084807 51087077 Mtr3g2391 3 37777507 37780146 ECH
Mtr1g4246 1 54109856 54116447 Mtr3g2391 3 37777507 37780146 ECH
Mtr3g2391 3 37777507 37780146 Mtr3g2391 3 37777507 37780146 ECH
Mtr4g3735 4 51084807 51087077 Mtr3g2391 3 37777507 37780146 PCT