Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2388 ATGATGATGGATGGACGGCGGCATTCTGTCGATTTACCGATTTCTAAGGCTCTTGTAGCATTGAGGAGAGTCAGGTCATTGAAGGATCCATCAACTAATTCTGTGACCAATCATTCTCCTTTGATTGACAACTTACATTGGGAAAACAGTACTGGCAATGGTTCTTTGATGTTTCCAGATGCTTTTGATTCTGATGATAACCTTGCTAGTTCAAGGCATTTAGGATTTAAAGGGGGAAGAGAGCTGGATGCTACCAGTTTGGAATTGAGTCATGGACTGTTGAATTCAAGACCGAATCGACGAAGTGTTTATGGAAATAAATCACCTAGTGAAAGCTGTGGTAGCAACCATGGTGGTAAAGGATTGGATATTAATGATTTCAAGGATGGGGGGCTGTACTATCGAGAAATTGGAAGATCGTCTAAATTAGGGAGAATGGATCACGCTAAGCCAGCTAGAAAACTTCTACGCAAGAATCAAGTTAAACCATCTGATGTGGTGGGAGATATTGCTAGCAATTTGAGCACTCCGTGCCCTTGTGTTCGCAATGCTTTATCACCCCAAGGTTCGTTGGCACTTGTAAATAAAGATTTTGGTGTTCTAGATAATAGGGAAAATGGATGTGGAAAAAACTGTTGCCTGTCAAATTCTCCTAGGTTTAGAGAATCAAATCTTTGTTTTGAGAAAGAAGACCGTTCCTTGATATTGAACTGCGTTGATGACACGGATCTTCATGGACATAGAAATGTGAGAGACAATGGCGGCGAAAGTAGTCCAAATTTGGAAACTCCTAGAATGTTATCTATGAAATTCAGACCTCTATCATTTGATGATTTGGTGGGACAAGATATGGTAGTTAGGTCTCTTTTGGCTGCACTCTCTAGTAGAAGGATAACATCATTTTATCTCTTCCATGGTCCACGTGGTACCGGCAAGACCTCTGCCTCAAAGATATTTGCTTGTGCACTGAATTGCATCTCTAATAAGAAGCAAAGACCATGTGGCCTGTGTAGAGAATGTGTTTTATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCACACAGACCAGGTTAAATCCCTTGTTAAGAATGCGTGTACACCTCCTGTTTCCTCTCGTTTTAAGGTTTTCATTATTGACGAGTGCCAGTTATTGAACCCCGAGACATGGGCGTGCCTTTCAAATAACCAAGATAACATTTCTCAACATGCAGTTTTTGTGATGATAACTACAGATTTGGATAAGCTTCCACAAAGTGCAGTTTCCCGGGCTCAGAAGTATTACTTTCCGAAGGTTCAAGATGCTAACATTGCTTGCAAATTAGAAAAAATTTGTACAGAAGAAGGTCTTGATTTTGAACAGGCTGCTTTAGACCTTATTGCTGCAAGATCCTGTGGTTCTGTCAGGGATGCAGAAATTATGCTTGATCAACTCAGTTTGCTTGGTAAAAAGATCAAAATTTCCTTAGTTTATGAGCTTACTGGGATTGTTTCAGACGATGAATTGCTTGATTTGCTTGATCTGGCTTTGTCACCTGACACATCAAATACTGTTATAAGAGCTCGCGAGCTGATGAGATCAAGGATCGATCCTTTGCAACTTGTGTCACAGTTGGTGAATCTCATAATGGACATCCTTGCTGGGAATCATGAAAATGGTGGTGATGAAGTCAGAAGTAAATATTCTAGTAGATATACTTCGAAAGCAGACCTTCGGAAACTAAGCCATGCATTGAGAATATTTACTGAAGCCGAGAAACAGTTAAGAATTTCGAAAAATCAATCAACATGGTTCACTGTAGCTCTACTACAGTTAAGCTCTGCTGATTATCCTTCCACAGATGCAGATGGTAACAAGTTGTCTCTGGGAGGTGCATGCAATGGAGATGAGCTTGGGAAGAACATGGAACATTTTGATGCAGGTAGTTGTGAAAACAAATCATTTAGACTAGTGGCGCAGGAGGATCACGAAGGAACACTGGATGCCATATGGTATAAAGCTACCGGGATATGTCAATCTAGTAAACTCAAAACTTTTCTCAGGAGGAAGGGAAAGTTGTCTTCACTTCTTGTTGATCAATCTACATCTTCTCTTGCTATTGTGGAGTTGGAGTTCGGTCGTCGCCACCATGTATCCAAGGCTGAGAAATCATGGAAATTGATAGCAAGTTCCTTGCAGTGCTTGTTGGGTTGCAACATTGAGTTGAGGATCATTGATGTTCCTCTCAGTACTTCTAATTCACCAAAGAGGTCATCTTTCAACATCTTTAGCTGTTCGCGCAGAATACAACAGACATCCAATGAACAAGAAAGTGAAATAGACTATGCTGATTACACCTCTGAAAATCCCATTATGAAGAATAAAACACTATCTTGTTCTTCCTCCTACTGTGGATCTCAGATTCCGCCACAAAATTCTTATAACGAAACGGATCCTGTATCGAGTCTGAGGAGTTGTGAAGGGAACTTGCTCAGCTCACGAGAAATATTTTTGAACACGTCTATGCATGAGATTATGGGAGCATCTTGTTCTGGAGTTGATTCTTCCAAGGAAGAGGGACACAATGGTGTACATTTAGTTCCATCACTCCCCAATTCAGATAATCGGTCTAACTGTTTTCCTCAATCTCTCTGGTTTCAAAAGAAGTTCCGTTCTTCATATTCCTCCAACTTGTCTTTTCAGGGCATCTAA 2712 0.4049 MMMDGRRHSVDLPISKALVALRRVRSLKDPSTNSVTNHSPLIDNLHWENSTGNGSLMFPDAFDSDDNLASSRHLGFKGGRELDATSLELSHGLLNSRPNRRSVYGNKSPSESCGSNHGGKGLDINDFKDGGLYYREIGRSSKLGRMDHAKPARKLLRKNQVKPSDVVGDIASNLSTPCPCVRNALSPQGSLALVNKDFGVLDNRENGCGKNCCLSNSPRFRESNLCFEKEDRSLILNCVDDTDLHGHRNVRDNGGESSPNLETPRMLSMKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFHGPRGTGKTSASKIFACALNCISNKKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVKNACTPPVSSRFKVFIIDECQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQSAVSRAQKYYFPKVQDANIACKLEKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGKKIKISLVYELTGIVSDDELLDLLDLALSPDTSNTVIRARELMRSRIDPLQLVSQLVNLIMDILAGNHENGGDEVRSKYSSRYTSKADLRKLSHALRIFTEAEKQLRISKNQSTWFTVALLQLSSADYPSTDADGNKLSLGGACNGDELGKNMEHFDAGSCENKSFRLVAQEDHEGTLDAIWYKATGICQSSKLKTFLRRKGKLSSLLVDQSTSSLAIVELEFGRRHHVSKAEKSWKLIASSLQCLLGCNIELRIIDVPLSTSNSPKRSSFNIFSCSRRIQQTSNEQESEIDYADYTSENPIMKNKTLSCSSSYCGSQIPPQNSYNETDPVSSLRSCEGNLLSSREIFLNTSMHEIMGASCSGVDSSKEEGHNGVHLVPSLPNSDNRSNCFPQSLWFQKKFRSSYSSNLSFQGI* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2388 903 Gene3D - 259 437 IPR027417 -
Mtr3g2388 903 Pfam DNA polymerase III, delta subunit 282 439 - -
Mtr3g2388 903 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 96 879 - -
Mtr3g2388 903 SUPERFAMILY post-AAA+ oligomerization domain-like 503 613 IPR008921 GO:0003677|GO:0006260
Mtr3g2388 903 MobiDBLite consensus disorder prediction 96 115 - -
Mtr3g2388 903 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 96 879 - -
Mtr3g2388 903 CDD AAA 280 421 - -
Mtr3g2388 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 488 IPR027417 -
Mtr3g2388 903 MobiDBLite consensus disorder prediction 96 120 - -
Mtr3g2388 903 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 266 612 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mtr3g2388 903 CDD HLD_clamp_pol_III_gamma_tau 441 502 IPR045085 -
Mtr3g2388 903 Gene3D - 441 502 - -
Mtr3g2388 903 Gene3D - 503 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2388 Mtr-Chr3 37747252 37752280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2388 258 567 Core DNA Replication Machinery Family AT1G21690 23.885 1.45e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2388 - - gmx:100819111 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2388 3 37747252 37752280 Mtr3g2388 3 37747252 37752280 ECH
Mtr4g3734 4 51063231 51068716 Mtr3g2388 3 37747252 37752280 PCT