Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2382 ATGGAACCGTCTCAACAATCTCAATCACATTTGATTTCTTCTCATGTTCAACATATTTCCCCTGTTTCCAACCATCATCCTCCTGAACCATCAGATCTCAATCAATTGGCCCAGCTTGATGATGAGCTTCAGAACAAGTTGGATTTGAAAGATGAGGATGTAATTGAGGAAAAAGGTTCAAACTTTGAAGTTGGTCATGAAGTTGCTGTTCTAGAATCTGATAAGGGACAAGGGTGTCATGATGATGATGAGAATGTGAATGAGAAGGTTAGTACTGATGTTGATGAAGTTGGTGGAATTGATGATAAAGGTTCAAACTTTGAAGTTGATGATGAAACATCTGCCACAGTATCTGAGAAGGGACAAGGGTTTCATCAAGTTGATGTTGATGATGATGATGGTTGGAATGGTGATTATGATGGTTGGAATGATGATAATGAGGTGAGTGATTGGATTGAGAATGAGGTGAGTGGAGATGTTGATGAAAGAAGCAATGGTGGAGCTGAACAGTATCCATTGAGGCCTGAAGCTGAAGACTGTTCTTTTTATCTCAAGACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTCTTGGGAGAAGAAACCAGGTTTTTAGAGAGAGGGCAGGAGAAAGAGATGAATTGGAGGAAAGATCAAGCCAGACAGAATGCAAGTATTATTCAAGATCTGGGGGTTGTAAGTTTGGAAAGGATTGTAAATTTGATCACACCAGAGGAAAATTTTCAGCAGATCAAGTTTTAGAGCTTAACTTCCTTGGCCTACCTATTCGTTTGGGTGAGAAAGAATGCCCTTATTACATGCGCACCGGTTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACATCTGTTGGAGGGTATGACTCCACTGCAGGATATGGTAATGGAAGTACTACTTCATTGCAAGACGTGTCACAATCATCTACACCCCCATGGTCTTCTACCAGAAAATTCAATGAAACTGCTCCTTTTGTGCCAATCATAATTTCACCGACTCCAGGGGCTTCTCCCCGAAGTTCTGACTGGAATGGATATCAGGCACCTTTCTATTTATCTGAGAGGAGTATGCATCCACCTTCACCATATGCCGTGAACAACCCAGCTATGGAAATGAATGCTTATATGCACCGTCATAAGCATACACCAGTTGAAGAGTTTCCAGAAAGACCTGGCGAACCCGAATGCAGTTTCTTCTTAAAAACTGGGGATTGCAAATTTAAATCCCATTGCAAATTTCATCATCCAAAGAATCGGATTACAAAATTACCTCCATGCAACCTAAGTGACAAGGGTCTGCCTTTGAGACCTGGCCAGAATGTGTGCACTCATTACAGCCGGTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTATGACCACCCGATAAACCTACCGCCCCCAACTATGCCTGGACGTTATCAACAATCCTCTCACACAAACTCGGCTAGTATTGAGGAGGCTGGAAGTGCAGGAGCTAGTGATGCAACAATTTGA 1536 0.4186 MEPSQQSQSHLISSHVQHISPVSNHHPPEPSDLNQLAQLDDELQNKLDLKDEDVIEEKGSNFEVGHEVAVLESDKGQGCHDDDENVNEKVSTDVDEVGGIDDKGSNFEVDDETSATVSEKGQGFHQVDVDDDDGWNGDYDGWNDDNEVSDWIENEVSGDVDERSNGGAEQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPLGRRNQVFRERAGERDELEERSSQTECKYYSRSGGCKFGKDCKFDHTRGKFSADQVLELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTSVGGYDSTAGYGNGSTTSLQDVSQSSTPPWSSTRKFNETAPFVPIIISPTPGASPRSSDWNGYQAPFYLSERSMHPPSPYAVNNPAMEMNAYMHRHKHTPVEEFPERPGEPECSFFLKTGDCKFKSHCKFHHPKNRITKLPPCNLSDKGLPLRPGQNVCTHYSRYGICKFGPACKYDHPINLPPPTMPGRYQQSSHTNSASIEEAGSAGASDATI* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2382 511 MobiDBLite consensus disorder prediction 481 511 - -
Mtr3g2382 511 SUPERFAMILY CCCH zinc finger 174 204 IPR036855 GO:0046872
Mtr3g2382 511 SMART c3hfinal6 403 430 IPR000571 GO:0046872
Mtr3g2382 511 SMART c3hfinal6 267 294 IPR000571 GO:0046872
Mtr3g2382 511 SMART c3hfinal6 221 248 IPR000571 GO:0046872
Mtr3g2382 511 SMART c3hfinal6 174 201 IPR000571 GO:0046872
Mtr3g2382 511 SMART c3hfinal6 449 476 IPR000571 GO:0046872
Mtr3g2382 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 200 IPR000571 GO:0046872
Mtr3g2382 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 293 IPR000571 GO:0046872
Mtr3g2382 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 246 IPR000571 GO:0046872
Mtr3g2382 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 405 430 IPR000571 GO:0046872
Mtr3g2382 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 451 475 IPR000571 GO:0046872
Mtr3g2382 511 ProSiteProfiles Zinc finger C3H1-type profile. 267 295 IPR000571 GO:0046872
Mtr3g2382 511 MobiDBLite consensus disorder prediction 1 42 - -
Mtr3g2382 511 SUPERFAMILY CCCH zinc finger 447 475 IPR036855 GO:0046872
Mtr3g2382 511 ProSiteProfiles Zinc finger C3H1-type profile. 403 431 IPR000571 GO:0046872
Mtr3g2382 511 PANTHER PROTEIN PHOSPHATASE RELATED 18 511 - -
Mtr3g2382 511 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 18 511 - -
Mtr3g2382 511 Gene3D - 402 482 - -
Mtr3g2382 511 Gene3D - 151 210 - -
Mtr3g2382 511 SUPERFAMILY CCCH zinc finger 224 250 IPR036855 GO:0046872
Mtr3g2382 511 Gene3D - 215 304 - -
Mtr3g2382 511 ProSiteProfiles Zinc finger C3H1-type profile. 174 202 IPR000571 GO:0046872
Mtr3g2382 511 SUPERFAMILY CCCH zinc finger 408 433 IPR036855 GO:0046872
Mtr3g2382 511 MobiDBLite consensus disorder prediction 483 501 - -
Mtr3g2382 511 MobiDBLite consensus disorder prediction 27 41 - -
Mtr3g2382 511 ProSiteProfiles Zinc finger C3H1-type profile. 221 249 IPR000571 GO:0046872
Mtr3g2382 511 SUPERFAMILY CCCH zinc finger 268 294 IPR036855 GO:0046872
Mtr3g2382 511 MobiDBLite consensus disorder prediction 1 21 - -
Mtr3g2382 511 ProSiteProfiles Zinc finger C3H1-type profile. 449 477 IPR000571 GO:0046872
Mtr3g2382 511 MobiDBLite consensus disorder prediction 58 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2382 Mtr-Chr3 37694004 37698095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2382 399 498 C2H2 Transcription Factor Family AT3G02830 45.545 2.80e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g2382 zf-CCCH 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2382 - - gmx:100809906 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3732 4 51045200 51049282 Mtr3g2382 3 37694004 37698095 ECH
Mtr3g2382 3 37694004 37698095 Mtr3g2382 3 37694004 37698095 ECH
Mtr4g3732 4 51045200 51049282 Mtr3g2382 3 37694004 37698095 PCT