Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2380 ATGTACGACATATCAACATTTTTATATTCAACTTGTGAAGCTATATTGAACATTCTTTGTCCCAAAATCAGAAAAGGTTATATTCAACACTTTCTCCATCCTAGGGTTTTCCTTTTCATTCTTCTTCCATTCAGAGCGCCGAGAGAGAATAAGAACAGTGCAATGGTTCGCAATCAACAAGTAAAAGTGTGTAGTTCTTGTACTCACCACTGTAGATTCTTTGATCACTTTCAACGAACAAAATCTACCTCGCCCAACTCTTTCTACAACCTCATGCTTTATCAACGAGATTTCCAAGTTTTGGATCTTCCTTCTAAGTTAAATCCTACTATGTCATTGTTGGTTGATCAGAAAATCAATCTTGAGGATTCAACCGGTAAGAGATGGGCTATAACAGTATCAGAAGTTGATGGTTCTTTTGCTTTTAAGAAAGGATGGGATGATTTCTCATCGGCTCACAAGCTTGAAATTGGAGATTTGCTTGTATTCAACTGCATTAACAAGTATAACTTTGATGTCAAGATCTATGACCAGTCTATGTGTGAAAGGATTGATTTTTCTGACAAAAGAAAGAGGAAAAAGAGAAGTAGATGCAGCAGTGGCTCACTTGATGCAGGAGGAACACCAAATAGCGTAGAAGTTGTTTCAGAAAATGTTAATGTGGATAGAAGCGTCAAATGTCCGCGCACATCAGAAGACACATCATACATAAGAAACCATGTATATCTAAATGATGCTGCCATTTTTAACAATGATCCTATGTTTGAAGAAGTGTTGGGCTCAGGGGATACCTCATACGCTTCTAAATTTGGATTGTTGGATAGAAAAGATTTTTTTTGGAGTCAAGTTCAAGATAGCCAAGTCACCGAGAGTTTAGAGCGGCCAAAGGTTGTTAAGGGAGAGTTGAATCGAGATAATAGCGAGAACAGATCGATTATTTCCAATGGAGAAGTTCAGGAGTGCCAGCTTGGCGTGAGCTTAGGGCCGATATCTGTAGAGTTGCTCGATGAGATGACAAATGATCTAGATGCGCAAATGCACATTGAGTTGCCAAAGCCAAATGTTATTAAGGGAGAGATTAATCAAGATATTAAAAGTCACTTTGAAACTGCAGCCACTATCTCCTGTGAGAACACCAGACAGAGGTTCAATGAAATGTCCAATCTCTCAGATGATCAAAGTCACCTTGGTGTAAAGAAGAAAATGCCAATGGAAATGACTCCCAATTTGTTCATTTGCAATGAAAAATTGAATGCAACAGGGCCGCCAGAGATTATTATTAAGAAAGAGTATAATGAAGATGAAACTGTGACCTGTGTGGTGCTCGCTGATAACAGTCATCTTAAATTGTCAGAATGCTTGCCACTATCTCGCGCTGGATTGCGTTCAAAGAGGATGGTGGTGATACTTAAGGATGCACTGGAGAGATTGTGGCCGGTCCTTTGCCTTGAACAAACTTCGTTGACAAGTGGATGGCCAGATTTTCGAATAGCAAATAATATTAAATCAGGTGATGCGTGTGATTTTCGGGTTGAGGACAAGTCTAAATGTATCGTTGCTGTAGATATTCACCACAAGTGA 1581 0.3915 MYDISTFLYSTCEAILNILCPKIRKGYIQHFLHPRVFLFILLPFRAPRENKNSAMVRNQQVKVCSSCTHHCRFFDHFQRTKSTSPNSFYNLMLYQRDFQVLDLPSKLNPTMSLLVDQKINLEDSTGKRWAITVSEVDGSFAFKKGWDDFSSAHKLEIGDLLVFNCINKYNFDVKIYDQSMCERIDFSDKRKRKKRSRCSSGSLDAGGTPNSVEVVSENVNVDRSVKCPRTSEDTSYIRNHVYLNDAAIFNNDPMFEEVLGSGDTSYASKFGLLDRKDFFWSQVQDSQVTESLERPKVVKGELNRDNSENRSIISNGEVQECQLGVSLGPISVELLDEMTNDLDAQMHIELPKPNVIKGEINQDIKSHFETAATISCENTRQRFNEMSNLSDDQSHLGVKKKMPMEMTPNLFICNEKLNATGPPEIIIKKEYNEDETVTCVVLADNSHLKLSECLPLSRAGLRSKRMVVILKDALERLWPVLCLEQTSLTSGWPDFRIANNIKSGDACDFRVEDKSKCIVAVDIHHK* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2380 526 CDD B3_DNA 116 177 IPR003340 GO:0003677
Mtr3g2380 526 SUPERFAMILY DNA-binding pseudobarrel domain 451 521 IPR015300 -
Mtr3g2380 526 Gene3D - 79 181 IPR015300 -
Mtr3g2380 526 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS02G0598200-LIKE 61 526 - -
Mtr3g2380 526 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 61 526 IPR044837 -
Mtr3g2380 526 ProSiteProfiles B3 DNA-binding domain profile. 468 525 IPR003340 GO:0003677
Mtr3g2380 526 ProSiteProfiles B3 DNA-binding domain profile. 77 179 IPR003340 GO:0003677
Mtr3g2380 526 Pfam B3 DNA binding domain 116 177 IPR003340 GO:0003677
Mtr3g2380 526 Gene3D - 428 526 IPR015300 -
Mtr3g2380 526 SUPERFAMILY DNA-binding pseudobarrel domain 83 181 IPR015300 -
Mtr3g2380 526 SMART B3_2 77 179 IPR003340 GO:0003677
Mtr3g2380 526 SMART B3_2 436 524 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2380 101 183 REM Transcription Factor Family AT4G33280 34.118 9.20e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr3g2380 B3 7.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2380 - - mtr:MTR_3g075140 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2380 3 37630828 37634967 Mtr3g2380 3 37630828 37634967 ECH