Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2321 ATGGCAGCTATGATGAATTATTACAGTAACATGCAACAGTTTCAATTTCATGACTCAGATCCATTTAGAGGTGAATTAATGGAAGTTCTTGAACCTTTTATCAAAAGTCCTTCTTCAACTTCAACTTCACCTTCATCTTCAACACCATCACCTTCTTATTCTTCTTCTCTCTCTTCACCTTCTTTCTACACAGAGCAAAACTTCATAGGCTTTGCTCAACCATCTTCTTCTTTTTCTTCTCCTTCTCTTCTTGGTCTCAACCACTTGACACCATCACAAATCAACCAAATCCAAGTACAAATCCAACAACAAAACTTCACCATGCAACATCAACAAATTCAACAGCAACAACAACGTTGTCTTAGTAACACTTTGAGTTTTCTTAGTCCAAAGTCAATTCCTATGAAGCATGTGGGTGGTAGTAGTGTTTCAAAACCCACAAAGCTATACAGAGGAGTGAGACAAAGGCACTGGGGAAAATGGGTTGCTGAGATAAGACTACCTAAGAACCGAACAAGATTATGGCTTGGTACTTTTGACACAGCTGAAGAAGCAGCTTTGGCTTATGATAAAGCTGCTTATAAGCTACGTGGTGACTTTGCTAGGCTAAATTTTCCAAATTTGAAACACCAAGGTTCAATTATTGGTGGTGAATTTGGTGAGTTTAAACCTCTTCCTTCTTCTGTTGATGCTAAGCTTCAAGCTATTTGTGAAGGTTTAGCTGAGATGCAGAAACAGGGGAAGGCTGAGAAGCCTAAGAAGATGCCGGCGTCGAAGGCGAAAGCCTCTTCAAAGGTGGTTTCTAAGGAGTCTGTTGATGATTTGAAGAAGGATTCAGAGCCAGAGGAGTGTTGTAAGGTTGAAGCAGTTTCAGTGATTACTGAGAGTGAAGGTTCTGAAGGTTCTTCACCACTTTCAGATCTTACTTTTGGTGATGTTGGTGAACCACAGTGGGAGGGTGATTCAGAAAATTTTAATTTGCTCAAGTACCCTTCTTATGAGATTGATTGGGATTCTCTGTGA 1023 0.3998 MAAMMNYYSNMQQFQFHDSDPFRGELMEVLEPFIKSPSSTSTSPSSSTPSPSYSSSLSSPSFYTEQNFIGFAQPSSSFSSPSLLGLNHLTPSQINQIQVQIQQQNFTMQHQQIQQQQQRCLSNTLSFLSPKSIPMKHVGGSSVSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSIIGGEFGEFKPLPSSVDAKLQAICEGLAEMQKQGKAEKPKKMPASKAKASSKVVSKESVDDLKKDSEPEECCKVEAVSVITESEGSEGSSPLSDLTFGDVGEPQWEGDSENFNLLKYPSYEIDWDSL* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2321 340 ProSiteProfiles AP2/ERF domain profile. 149 206 IPR001471 GO:0003700|GO:0006355
Mtr3g2321 340 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Mtr3g2321 340 MobiDBLite consensus disorder prediction 266 280 - -
Mtr3g2321 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 339 - -
Mtr3g2321 340 MobiDBLite consensus disorder prediction 35 56 - -
Mtr3g2321 340 SUPERFAMILY DNA-binding domain 149 206 IPR016177 GO:0003677
Mtr3g2321 340 CDD AP2 148 208 IPR001471 GO:0003700|GO:0006355
Mtr3g2321 340 SMART rav1_2 149 212 IPR001471 GO:0003700|GO:0006355
Mtr3g2321 340 MobiDBLite consensus disorder prediction 244 280 - -
Mtr3g2321 340 MobiDBLite consensus disorder prediction 294 316 - -
Mtr3g2321 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 339 - -
Mtr3g2321 340 Gene3D AP2/ERF domain 149 207 IPR036955 GO:0003700|GO:0006355
Mtr3g2321 340 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Mtr3g2321 340 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2321 Mtr-Chr3 36962291 36964115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2321 1 340 AP2-EREBP Transcription Factor Family AT1G78080 52.941 3.96e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr3g2321 AP2 7.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2321 K09286 - gmx:100800478 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2321 3 36962291 36964115 Mtr3g2321 3 36962291 36964115 ECH
Mtr5g2134 5 27536813 27538845 Mtr3g2321 3 36962291 36964115 PCT