Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2304 ATGATGTCGTCGTGTAATTCTTCTCCGTGTGCAGCGTGCAAGATTCAGCGTCGAAAATGCACTAAGGAATGCATTTTTGCACCCTATTTTCCGCCGGAAAATCCTCAAAAGTTTACCTACGTCCACAAAGTCTTCGGTGCTAGCAACGTGGCAAAGTTACTCAACGAGGTTGATGCTTCTCAACGTGAAGATGCTGTTAAGTCTTTAGCTTATGAAGCAGAAGCGCGTTTGAGAGATCCTGTTTATGGTTGTGTTGGTCTTATTTCACATCTTCAGAATAAGCTTAAGAATTTGCAGAATGAACTTAACGTTGCTAAGAAAGAACTTGCTACTTATGTTGGTCCTCAGATCATGCTTCCTACTCCGATGACGGCGGTGTCGAGTTCTTATTTTTCTGTTACTTCTTCTTCTGTTCATCAACAGCGTCAAGAGTTTTTCACTTTCAATGCTGAAAACTCGTTTTCTAATAACTTTCAGATGAACCCTTTTCAGAATCAGTTAATGGTTTCATCATCACAGGCACAATCTTCACAACCCATCAACCCATTTTTGTCAAAGAAGGTTTTCAAGGCTGAAAGGGACAACCTTGGAGAGGGTATGATCACTCTTAATCCTTACCGGTTTGAGGCAAACAAGTGCAAAGAACCAAAAAGTGATACAAGTTTGCAGTATAAGAAAGGAGGCTGGGAGAGATATATAGGGTGTCCTCGTGTTTGTAATGCAACTTCTCTTGAGGCAGAATTTTGTGCTTGTCTATTTGCTATGGAAAGGGCTTCTGAGATGTGTTATGAGGATATTTGGATAGAGACTGATTCTCTGAGTGTGGTAAAGGCTTACAATACAGGTGAAGGTGTTCCTTGGCGTATGCAAGCTAGATGA 879 0.4118 MMSSCNSSPCAACKIQRRKCTKECIFAPYFPPENPQKFTYVHKVFGASNVAKLLNEVDASQREDAVKSLAYEAEARLRDPVYGCVGLISHLQNKLKNLQNELNVAKKELATYVGPQIMLPTPMTAVSSSYFSVTSSSVHQQRQEFFTFNAENSFSNNFQMNPFQNQLMVSSSQAQSSQPINPFLSKKVFKAERDNLGEGMITLNPYRFEANKCKEPKSDTSLQYKKGGWERYIGCPRVCNATSLEAEFCACLFAMERASEMCYEDIWIETDSLSVVKAYNTGEGVPWRMQAR* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2304 292 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Mtr3g2304 292 Gene3D - 218 291 IPR036397 GO:0003676
Mtr3g2304 292 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Mtr3g2304 292 Pfam Reverse transcriptase-like 240 281 IPR002156 GO:0003676|GO:0004523
Mtr3g2304 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 3 175 - -
Mtr3g2304 292 Coils Coil 88 108 - -
Mtr3g2304 292 CDD RNase_H_like 241 288 IPR044730 -
Mtr3g2304 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 175 - -
Mtr3g2304 292 SUPERFAMILY Ribonuclease H-like 233 287 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2304 Mtr-Chr3 36736211 36739949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2304 4 120 AS2 family AT5G66870 76.068 9.36e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr3g2304 LOB 9.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2304 - - gmx:100812543 201.83