Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2291 ATGAACCGCCAAGTACTACCACCGTCACCAAAAAACGCATCCTCACTCAACCCAAAACTCTGGCGAGCTATCGCCGGCGCCGCCGTGCAAATCCCTACCGTCAATTCTAGGGTTTACTACTTCCCTCAAGGTCACATGGACCAAGCTACTTCACTTCCGAACAATCTCTCACCTCTTCTTCTCTCTCGTCCCTACATTCTCTGCTCTGTCTCCGCCGTTCATTTCCTCGCCGATCCGAAAACCGACGAGGTTTTCGCTAAGCTTTTCCTTCAACCGTTGAATGATTTCACCGTTAATTTTCCACGGATTCCGGTGATTGAAGCTGACGACGGTGAGAGGATTTCTTCGTTTGCGAAGATTCTTACTCCGTCTGATGCGAACAACGGTGGTGGATTTTCTGTTCCGAGGTTTTGTGCTGATTCGATTTTTCCTCCGTTGGATTATAGTATGGATCCTCCGTTGCAGAATCTGTTGATTACTGATGTTCATGGTTTGACTTGGGAGTTTCGTCACATTTACCGTGGAACGCCGCGCCGGCATTTGTTGACCACCGGTTGGAGTAAGTTTGTGAACGCTAAGAAGCTTGTTGCTGGTGATTCGGTTGTTTTTATGAAGAATACTAGAGGTGCAATGTTCATCGGAATCCGTCGTGCTGTTCGATTCGTTCCAAATCGAACTAGTTCCGGTGTTTGCTCCGATGTGTCGAGATTGTGTCTTCCGATCTGTGGAGTGAGAAGTAGGGTGGATGATGAAGAGAAGCTGGTGGAAGAGAAGGCATTTTCGAGGCACGGGAAGGGGAAGTTGTCTCCGGTGGCAGTTGCGGAGGCGGCGGAAATGGCGGCTCAGGGGATGGGGTTTGAAGTGGTGTATTATCCGAGAGCAGGGTGGTCGGATTTTGTGTTGAAAGCGGAGGTTGTGGATGCGGCGATGAGTGTTACTTGGTGTCCTGGAATGAGAATCAAAATGGCTGTTGAGACTGATGATTCTTCCAGGACTACTTGGTTTCAGGGTGTAGTGTCTCAGGTCTCTGTTCCTGATCATGGTGCTTGGAGAGGTTCACCTTGGCGTATGCTTCATATTACATGGGACGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGGTGGAACTTCTTTCTACTACACCTTCCCTTCATACCCCCTTTCCCCCATTGAAAAGGACTAGAGGGGTATCTGGGGTGTTAACTGATGGAGATGGAGACCCCTTTTCTATCACAGGGTTCACTAATTCAACAACGGGACAATTGAATCAACCATTGTTGAGTTACAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCCGTTTCAAGTTTTTCCAACTTTCCAGGTGATAACTTCCGTCTTTGTATGGGTAACTCCTTTGGCAGCAACACAGTGCCGGGGTTGAAATCTTTTTCAACGGATCTAAACGTTGGCAGTTCTCAATCTGGTGATTTTTCACCAGAGAGCCAGAGTAGTTTGCCTTCCTTTGGCACAGATTTTGTTCGGAACTACAACTGCAACTCAATGAAACCCGGGCCTATAACGTTTCAGCTATTTGGTGCAGTCATTCAGACAGAACAGCCTGTTGAAAGTGGTTCACATGGTACTGTTAGCACAGGAGATGACAGCAGTAAGGGCTGCAACGAAACTGAAGGCATTAACAACCCTCTTGAGGATTCGACTTACTCAAAATTGCTTGACAGGCTTGATGGCCAGTGCCAAATAGCCTCAACAGTTGAGGCGTGCTATCTGTGA 1782 0.4798 MNRQVLPPSPKNASSLNPKLWRAIAGAAVQIPTVNSRVYYFPQGHMDQATSLPNNLSPLLLSRPYILCSVSAVHFLADPKTDEVFAKLFLQPLNDFTVNFPRIPVIEADDGERISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYSMDPPLQNLLITDVHGLTWEFRHIYRGTPRRHLLTTGWSKFVNAKKLVAGDSVVFMKNTRGAMFIGIRRAVRFVPNRTSSGVCSDVSRLCLPICGVRSRVDDEEKLVEEKAFSRHGKGKLSPVAVAEAAEMAAQGMGFEVVYYPRAGWSDFVLKAEVVDAAMSVTWCPGMRIKMAVETDDSSRTTWFQGVVSQVSVPDHGAWRGSPWRMLHITWDEPEVLQTSKWVSPWQVELLSTTPSLHTPFPPLKRTRGVSGVLTDGDGDPFSITGFTNSTTGQLNQPLLSYSTFPAGMQGARHDLFSVSSFSNFPGDNFRLCMGNSFGSNTVPGLKSFSTDLNVGSSQSGDFSPESQSSLPSFGTDFVRNYNCNSMKPGPITFQLFGAVIQTEQPVESGSHGTVSTGDDSSKGCNETEGINNPLEDSTYSKLLDRLDGQCQIASTVEACYL* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2291 593 SUPERFAMILY DNA-binding pseudobarrel domain 113 225 IPR015300 -
Mtr3g2291 593 Gene3D - 314 387 - -
Mtr3g2291 593 PANTHER AUXIN RESPONSE FACTOR 9 592 - -
Mtr3g2291 593 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Mtr3g2291 593 SMART B3_2 117 219 IPR003340 GO:0003677
Mtr3g2291 593 MobiDBLite consensus disorder prediction 538 563 - -
Mtr3g2291 593 CDD B3_DNA 116 217 IPR003340 GO:0003677
Mtr3g2291 593 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Mtr3g2291 593 Gene3D - 114 219 IPR015300 -
Mtr3g2291 593 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 592 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr3g2291 593 Pfam Auxin response factor 276 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2291 Mtr-Chr3 36599979 36603882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2291 12 560 B3 DNA Binding Superfamily AT1G77850 48.837 5.88e-167 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr3g2291 B3 1.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2291 - - qsu:112025063 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2291 3 36599979 36603882 Mtr3g2291 3 36599979 36603882 ECH