Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2287 ATGCTTTCGTTCATCTGCATCTTCTTATTGCCGGCGCCGATGACCGGAACCGGAGAACGATGCCACCGCCGCAACAACATGACGGAGCAAAAATCATCTGCCTGTCCGGCCGCCGCTCCGGCGGGAATCTCCACCGCTGATTTGGAGATTGATTACTTCTCGCAGGCGAGGAAAGTGCTGAGCGAGCGTTCACCGTTTGATGTTATCGAGGAACCGTCGACTTCTGCGGCGGTGGAGGTTACACTGCCGAGTGGTTTAGCGAGTTTGTTGAACCGTAACGGGGATAATAAGAAGCGTCAGAAGAAGTTGAATTCCGGTGGTGGTGGTGATAAGAAGAAGAAGAAATCGTCGAGGGCGAATGAGAAACGTGGTTTTAATGTTTGGGTTGAGACGGAGGAGTATTTTAGGGACTTGAATTTGAATGATATTGATACGTTATTGCAGGCTTATACTACGACATATAGTTTAGTTTCGAACGAGTGTTTTAAAATTCCGCATTTGGATAATGGTTCTAGGTTTAGTGTAGTCAGTAGTGAGAATGAGAAGAAGATTTTTCCATTGTTGAATGTAGTTTCTAATGAGAATGAGAATGCGGATGAGAAGAATGATGTCGAAGAAGTTAATAATGAGAATGAGAATGGTTGCTTGGTAATTGAGTTAAGTGACGTTGTTGAATTGGAAAGAGCTTTGCCGAATAACGATGACAAGAATTATGATGATTCTGAGAATTCTGTTGGTTTAGAGTGGTTTTTAGGTAGCAGGGATAAGGTATTTTTAGCTTCTGAGCGCCCATCGAAGAAAAGGAAACTTTTAGGTGGTGATGCCGGGTTGGAGAAAGTTAAAATGAATAGTCCAAGGGACGGGGACCAACCTTATTGTCATTATTGTGGCAGGGGAGATTCGGACACTGATTCAAATCGGTTAGTAGTATGCGCTTCTTGTAAAGTTGCGGTTCATAGGAAGTGTTATGGTGTGCAAGATGATGTAGATGATTCATGGTTGTGCTCTTGGTGTTCGAAGCAAAAGGGTGATGTTGATGACTCGGTGAATCCTTGTGTTCTTTGCTCAAAGAAGGGTGGCGCTTTAAAACCGGTTTATAGTGCTGTTGATGGTGTCGGGTCTTCGCCGTTTGTGCACCTTTATTGTTGTCTGTGGATGCCAGAGGTTTATATTGAAGATTTGAAGAAGATGGAGCCTGTTATGAATGTCGGAGGGATCAAGGAAAACAGAAGAAAATTGATGTGTAATATTTGCAAATTGAGATGTGGTGCATGTGTTCAGTGTACTCATGGATCCTGCAGAACTCCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGAATGGAGGTTTGGGCAAAGTACGGCAATGATAATATTGAATTGCGGGCTTTTTGCTCGAAACACTCAGATCTACAAGAGAACAGAAGCATCTTGCCTTTGGGAGGCTCTATTCCAGTTGGCAGTGAATTTTCAGAAGCTAATGACCTTCCAGTGAAAAGTGAACACAGTATAAAAATTGGTTTCGGCAATGGAGTGTTAGAGTCTGATGGTAATTCTGACAAGTTGAACCATAATGATGAACCTCCGAATGGAGGATTGTCTGTCGGTACGATTAGCGCACAAAATATGTTGGTATGTGGCGCTGCGCAACCACATAATATGGGTGTGGCAGGGAGAACCAATGAGAAGGTTGATAGCTCTAATTCCCCCAGTTTTGCACTTGTTTTGAGAAAGTTGATAGAGAAAGGGAAAGTTGATGTAAAAGATGTTGCATTGGAGACTGGCATTTCCCCAGATACATTAACTGCAAATATCAATGAAGCTCATATGGCCCATGATGTGCAACACAAAATAGTCAATTGGTTAAAAGCCCATGTGTATACTGGTGCATTTCAAAAATCGGCTATTGTATCCATGGATGAAAGTGGAGCTTCAGCTGGTTCTGATACTTCACCGTTATCTGATTCAGGCTTGCTCGATCCTGTTGCTGTTAATGTTAAGTCTGTACCACCAAGGAGAAGAACTATCAATAACATTAGGATTTTGAAGGACAATAAAGTGATATGTTCATCTGAGGGGGTTACTACTAGTGACGGTGGGGGGTCAATTGAAAAGTCCTTGGTTTGTCAGCCTGAGTGTGAAAATCCAGGAAGTTCTAACAAAGCATCAGTTCCCGATGCCACTGACATGAATTTAACCAAGTCTGAGGATATATTTCATGAGGTTCAAGGGAATGCTGATGACCTCTACAAATCCAGCTTATCTGTATGCGTTTCAGAACAGAACTCTACTGCTTGTTTGCAGAATGCATCTATGCTTTCCGATCCACACATTCCAGCTCATTCTGCTTCAGAACCACCCCTTCCTGGTTTCATAAAACTGGAAGCAATCTCTAGTTACGCTCACCCATACATTAACAAGAAGCTACTGCAGATTCGTAGTGGCTTGCCCTCGGAGAACCTTATGGCAGGTTTAAGTGGGTGCAGAAATTCTTTCGTTGAATCATCTGGAGCTAATAACTGCCCGAGTAGTGAAAATCAGCAGTTAATTTGTACTGACGTTTCCAAGCCTGATCCAGTAAAGATGGAGCAGTTGGTTAGGGATGAACAAATGCAACTTACGGAATTTTATTCAGAAGATGAGTTGGAGTGTGATCTTATATATTTTCAGCATAGACTGCTGCAGGAAGCAGTTGCAAAAAAGAGGCTTGCTGAAAACTTGGTCTACAATGTTGCCAAGAGTTTGCCCCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCGGTGATTGCTAGTCAATATCTGCGTGATCTTAGAGAGGCAAAGAAACAGGGTAGAAAAGAAAAGAAACACAAGGAAGCGCAGGCAGTATTGGCTGCTGCAACTGCTGCAGCAGCATCATCTACTAGGGTTTCTTCTTTCCGTAAAGACACCATAGATGAATCTATGCAACCGGAGAATTCATTGAAGTTGGATGCTTTATGTGGGCGGACTGGTCCATGTTCTCAGCCAATGCCCCGTGCCAAAGAGACTCTTTCTAGAGTTGCTGTCACTAGAGCTTCGTCAGAGAAATATTCGGATTTTTCTTTGCCAAGATCAGATATTTCTAAGGAGCAACGTAAATCATGTGATATCTGCAGACGATTTGAGAATGTGTTAAATCCTATCCTAGTCTGCTCTGGTTGCAAGGTTGCGGTGCATTCAGTTTGCTATCGTAGTGTGAAAGAAACAACCGGTCCATGGTACTGTGAATTATGTGAAGATCTATTGTCAAGAAGTTCTGGGCCATCTGCCATAAATAGCTGGGAGAAGCCATATTTTGTTGCAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCGTCTGATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGTTTTTTGAGTCTACGTTCAGAAGAGGACAGATAGATGCTATTGAAGGAATGGAGACTGTGCCAAAAGGAGTTGATATTTGTTGCATCTGCCATCGAAAGCATGGTGTATGTATGAAGTGTTGCTATGGCCATTGCTTGACCACATTCCATCCATCCTGTGCTAGAAGCGCCGGTTTGTTCATCATTATGAGGACTGCTGGAGGCAAGATGCAACACAAAGCTTACTGTGAAAAGCATAGTTCGGAGCAAAGAGCAAAGGCTGAAACTCAAAAGCATGGAGTTGAGGAGTTAAAAAGTATCAAGCCAATTAGGGTTGAACTTGAGAGATTACGTCTCCTTTGTGAAAGGATTGTCAAACGGGAAAAGATTAAGAGGGAATTGGTTCTATGCTCACACGACATACTTGCCTTTAAAAGAGATCATGTTGCTAGGTCCGTGCTTGTTCGTAGTCCTTTCGTCCTTCCAGATGGTAGTTCAGAATCAGCTACAACATCCCTGAAAGCAACCACAGAGGGATACAGGTCGTGCAGTGAAGCGCGCCAAAGATCAGATGATGTAACTGTGGATAGCTCAGTTTCTGCTAAGCACCGTGTCAGAGTTTCTGTATCCATTGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCACAAAGTCACTATAACCACAAGATTCCAGAGAAGATGCAATTTTCTGGCAAACAGATTCCCCGTAGAGCTTCTGCTACATCACGCAATATCTCTGAGGAGGATGCATGGAGATCCAAATCTCGAAAGTTACAGACGAATGAATCATTCGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAAGGCTACCTAAAGGATATGCATATGTTCCTGCAGATTGCCTGTCAAATGACAAGCAGTCTAATGAGGATGTATATGCTAGTGGACCAGGGGAACGTGATGGGTAG 4368 0.4311 MLSFICIFLLPAPMTGTGERCHRRNNMTEQKSSACPAAAPAGISTADLEIDYFSQARKVLSERSPFDVIEEPSTSAAVEVTLPSGLASLLNRNGDNKKRQKKLNSGGGGDKKKKKSSRANEKRGFNVWVETEEYFRDLNLNDIDTLLQAYTTTYSLVSNECFKIPHLDNGSRFSVVSSENEKKIFPLLNVVSNENENADEKNDVEEVNNENENGCLVIELSDVVELERALPNNDDKNYDDSENSVGLEWFLGSRDKVFLASERPSKKRKLLGGDAGLEKVKMNSPRDGDQPYCHYCGRGDSDTDSNRLVVCASCKVAVHRKCYGVQDDVDDSWLCSWCSKQKGDVDDSVNPCVLCSKKGGALKPVYSAVDGVGSSPFVHLYCCLWMPEVYIEDLKKMEPVMNVGGIKENRRKLMCNICKLRCGACVQCTHGSCRTPFHPLCAREARHRMEVWAKYGNDNIELRAFCSKHSDLQENRSILPLGGSIPVGSEFSEANDLPVKSEHSIKIGFGNGVLESDGNSDKLNHNDEPPNGGLSVGTISAQNMLVCGAAQPHNMGVAGRTNEKVDSSNSPSFALVLRKLIEKGKVDVKDVALETGISPDTLTANINEAHMAHDVQHKIVNWLKAHVYTGAFQKSAIVSMDESGASAGSDTSPLSDSGLLDPVAVNVKSVPPRRRTINNIRILKDNKVICSSEGVTTSDGGGSIEKSLVCQPECENPGSSNKASVPDATDMNLTKSEDIFHEVQGNADDLYKSSLSVCVSEQNSTACLQNASMLSDPHIPAHSASEPPLPGFIKLEAISSYAHPYINKKLLQIRSGLPSENLMAGLSGCRNSFVESSGANNCPSSENQQLICTDVSKPDPVKMEQLVRDEQMQLTEFYSEDELECDLIYFQHRLLQEAVAKKRLAENLVYNVAKSLPQEIDKTHQQRWDAVIASQYLRDLREAKKQGRKEKKHKEAQAVLAAATAAAASSTRVSSFRKDTIDESMQPENSLKLDALCGRTGPCSQPMPRAKETLSRVAVTRASSEKYSDFSLPRSDISKEQRKSCDICRRFENVLNPILVCSGCKVAVHSVCYRSVKETTGPWYCELCEDLLSRSSGPSAINSWEKPYFVAECALCGGTTGAFRKSSDGQWVHAFCAEWFFESTFRRGQIDAIEGMETVPKGVDICCICHRKHGVCMKCCYGHCLTTFHPSCARSAGLFIIMRTAGGKMQHKAYCEKHSSEQRAKAETQKHGVEELKSIKPIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVRSPFVLPDGSSESATTSLKATTEGYRSCSEARQRSDDVTVDSSVSAKHRVRVSVSIDTDPKLDDDCSTSQSHYNHKIPEKMQFSGKQIPRRASATSRNISEEDAWRSKSRKLQTNESFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKQSNEDVYASGPGERDG* 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2287 1455 SMART PHD_3 1165 1219 IPR001965 -
Mtr3g2287 1455 SMART PHD_3 414 470 IPR001965 -
Mtr3g2287 1455 SMART PHD_3 292 339 IPR001965 -
Mtr3g2287 1455 SMART PHD_3 1044 1089 IPR001965 -
Mtr3g2287 1455 Coils Coil 190 210 - -
Mtr3g2287 1455 MobiDBLite consensus disorder prediction 1433 1455 - -
Mtr3g2287 1455 CDD ePHD 1113 1218 - -
Mtr3g2287 1455 ProSiteProfiles Zinc finger PHD-type profile. 290 341 IPR019787 -
Mtr3g2287 1455 MobiDBLite consensus disorder prediction 89 119 - -
Mtr3g2287 1455 Pfam PHD-finger 306 338 - -
Mtr3g2287 1455 Pfam PHD-finger 1056 1089 - -
Mtr3g2287 1455 MobiDBLite consensus disorder prediction 1372 1395 - -
Mtr3g2287 1455 ProSitePatterns Zinc finger PHD-type signature. 1045 1088 IPR019786 -
Mtr3g2287 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 472 IPR013083 -
Mtr3g2287 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1110 1221 IPR013083 -
Mtr3g2287 1455 ProSitePatterns Zinc finger PHD-type signature. 293 338 IPR019786 -
Mtr3g2287 1455 MobiDBLite consensus disorder prediction 94 115 - -
Mtr3g2287 1455 ProSiteProfiles Zinc finger PHD-type profile. 1042 1091 IPR019787 -
Mtr3g2287 1455 ProSiteProfiles Extended PHD (ePHD) domain profile. 1110 1219 IPR034732 -
Mtr3g2287 1455 PANTHER PHD FINGER PROTEINS 198 478 - -
Mtr3g2287 1455 PANTHER PHD FINGER PROTEINS 858 1451 - -
Mtr3g2287 1455 Coils Coil 937 957 - -
Mtr3g2287 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1020 1095 IPR013083 -
Mtr3g2287 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 346 IPR013083 -
Mtr3g2287 1455 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 198 478 - -
Mtr3g2287 1455 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 858 1451 - -
Mtr3g2287 1455 SUPERFAMILY FYVE/PHD zinc finger 1035 1089 IPR011011 -
Mtr3g2287 1455 SUPERFAMILY FYVE/PHD zinc finger 281 343 IPR011011 -
Mtr3g2287 1455 Pfam PHD-zinc-finger like domain 1112 1218 - -
Mtr3g2287 1455 Pfam PHD-zinc-finger like domain 351 469 - -
Mtr3g2287 1455 ProSiteProfiles Extended PHD (ePHD) domain profile. 349 470 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2287 Mtr-Chr3 36545831 36556993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2287 287 476 C2H2 Transcription Factor Family AT3G14740 30.052 1.94e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2287 - - mtr:MTR_3g073320 2432.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2287 3 36545831 36556993 Mtr3g2287 3 36545831 36556993 ECH