Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2278 ATGGTACAAACACTCTCAATGCCTGTGGCACCTTCACTCTCAATCATCTCCAAAGGCCATGCTCACTTCTCCAATCGAGTTTCCTTCCCAGTTCTCAACACTCCAAAGTCAAAGGTTCAAAGGCTGAACATTGTGTGTGTTCGTGTTGGTGGTGTGGAAATTCCAAACAACAAGAGAATTGAATTTTCATTGCAGTACATTCATGGAGTTGGAAGGAACAGAGCGAGACAGATTCTAACTGATATCAGTATGGAGAATAAAGTTACTAAGGAATTGAGTGAAGAAGAGCTTATTAGTCTCAGGGATGAAGTTAACAAATACATGATTGAAGGAGATTTGAGAAGGTTTAATGCACTTAATATAAAGAGGTTGAAGGAGATTCAGTGTTACAGAGGAATAAGGCATATTCAGGGACTTCCTTGTAGAGGACAACGTACCAAGAACAATTGCAGGACATTGAAGGGTAAGAAGGTTACTGTTGCTGGCAAGAAGAAAAAGTAA 501 0.3992 MVQTLSMPVAPSLSIISKGHAHFSNRVSFPVLNTPKSKVQRLNIVCVRVGGVEIPNNKRIEFSLQYIHGVGRNRARQILTDISMENKVTKELSEEELISLRDEVNKYMIEGDLRRFNALNIKRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVTVAGKKKK* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2278 166 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 165 - -
Mtr3g2278 166 ProSiteProfiles Ribosomal protein S13 family profile. 49 155 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr3g2278 166 TIGRFAM uS13_bact: ribosomal protein uS13 48 157 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr3g2278 166 Gene3D 30s ribosomal protein s13, domain 2 116 166 IPR027437 -
Mtr3g2278 166 Pfam Ribosomal protein S13/S18 48 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr3g2278 166 Coils Coil 90 110 - -
Mtr3g2278 166 ProSitePatterns Ribosomal protein S13 signature. 131 144 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr3g2278 166 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 165 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr3g2278 166 Hamap 30S ribosomal protein S13 [rpsM]. 46 162 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr3g2278 166 SUPERFAMILY S13-like H2TH domain 47 158 IPR010979 GO:0003676
Mtr3g2278 166 Gene3D - 47 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2278 Mtr-Chr3 36447885 36448740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2278 47 164 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 31.544 8.04e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2278 K02952 - gmx:100500355 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2278 3 36447885 36448740 Mtr3g2278 3 36447885 36448740 ECH