Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2272 ATGGAGGAATTGCAACAAGCACTGAAGAATTGTAATTTAACAGTTTCCACCATCTCAGAAAAGGGTCGTTCTCTTTTTACTACTAGAGATTTCCACCCAGGGGATGTGATTATTAGCCAAGAGCCCTATGTTTGTGTTCCAACTCAAAAAAGGTGTGATGGATGTTTCTCAACAACTAACCTTAGCAAATGCTCACGTTGTCAAGTTGTTTGGTATTGCGGAACACCATGTCAGAAATCGGAGTGGAAGTTGCATCGTCTTGAATGTCAAGCACTCTCAAGGCTAGACAGCAACAAGAGAAAATCTGTTACACCGTCGATACGGTTGATGCTCAAACTTTATCTTCGAAGGAAGTTGCAAGATCAGAAGATCATTCCAAGCACTGCTATGGACAATTACAAGTTAGTGGAGGCATTAGTGGCTCACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACATTTAATACTACAATGGCCTGAAATCAATATAAAAGAGATTGCAAATTTTTTTTCCAAGTTTGCATGTAATGCGCATACCGTTTGTGACAGTGAGTTGAGACCTTTGGGAACAGGGTTGTATCCTGTTGTTTCCATTATCAATCACAGCTGTTTGCCCAATTCAGTGTTGGTTTTTGACGGAAGGGAAGCATCAGTACGTGCTTTGCAACATATACCCAAAGGGACTGAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACTGTGACTCGACAAAAGGCTCTCAGAGAGCAGTACCTATTCCAATGTGTTTGTCCCCTCTGTTCCAAAGTGGGTCAGTATGAAGATGTTCGAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGCACAACTGATGGAAAAGCATTTCAATGCCAAGAATGTGGGTTAGTTAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATAAAATTTCTATTAGAAGAAGCTTCTAAGCCTTCTTCCAATGGCAATTCTCATGAAGCTATTTCCATCCATAAAATGATTGAGAAACTGCAAACAAAACTATATCACCCTTTTTCAATCAATTTGATGCAAACACGAGAGACAATTTTGAAGTCATTAATGAAGCTGGAATATTGGAGAGAAGCTTTAGCATATTGCAAATTGACCATACCAATATATCAAAGAGTGTATCCAGCTGTTCACCCTTTGCTTGGCTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTTGGAGACACGGAGGAAGCTATTAAATCATTGACCAAGGCTGTGGATATACTAAGGATTACTCATGGTACAAAGACTCCATTTGTGAAGGAACTATCGATGATGTTGGTGGAAGCCCGTGCAGAAGCCTCTTTCTTACAAATCGACCTCTAA 1428 0.3978 MEELQQALKNCNLTVSTISEKGRSLFTTRDFHPGDVIISQEPYVCVPTQKRCDGCFSTTNLSKCSRCQVVWYCGTPCQKSEWKLHRLECQALSRLDSNKRKSVTPSIRLMLKLYLRRKLQDQKIIPSTAMDNYKLVEALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIANFFSKFACNAHTVCDSELRPLGTGLYPVVSIINHSCLPNSVLVFDGREASVRALQHIPKGTEVLISYIETAGSTVTRQKALREQYLFQCVCPLCSKVGQYEDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLLEEASKPSSNGNSHEAISIHKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEYWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAIKSLTKAVDILRITHGTKTPFVKELSMMLVEARAEASFLQIDL* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2272 475 SUPERFAMILY TPR-like 341 442 IPR011990 GO:0005515
Mtr3g2272 475 ProSiteProfiles Zinc finger MYND-type profile. 52 89 IPR002893 -
Mtr3g2272 475 SMART set_7 11 250 IPR001214 GO:0005515
Mtr3g2272 475 Coils Coil 1 21 - -
Mtr3g2272 475 Coils Coil 315 335 - -
Mtr3g2272 475 Gene3D Tetratricopeptide repeat domain 397 472 IPR011990 GO:0005515
Mtr3g2272 475 Gene3D - 51 101 - -
Mtr3g2272 475 ProSitePatterns Zinc finger MYND-type signature. 52 89 IPR002893 -
Mtr3g2272 475 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 468 - -
Mtr3g2272 475 Pfam SET domain 22 243 IPR001214 GO:0005515
Mtr3g2272 475 Pfam MYND finger 52 89 IPR002893 -
Mtr3g2272 475 Gene3D - 102 186 - -
Mtr3g2272 475 Gene3D SET domain 24 270 IPR046341 -
Mtr3g2272 475 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 468 - -
Mtr3g2272 475 ProSiteProfiles SET domain profile. 11 244 IPR001214 GO:0005515
Mtr3g2272 475 SUPERFAMILY SET domain 9 243 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr3g2272 SET 5.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2272 K11426 - gmx:100789518 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2272 3 36348306 36354602 Mtr3g2272 3 36348306 36354602 ECH