Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2254 ATGTCTTTGAGTCCTCCAAGAGAGAGAACAAACAACCAACGTAGAAACTTTCAACTCTACTATTGCTTCCAATGCAACCGTACGGTCCGCGTTGCACCATATAACTCCTCTGACTTGATATGCCCCCGTTGCTTCGGCCAATTCATATGTGAAATAAACATTCCAAGACCAAGACTTGTCGTAGACTTCACCGCACATGATCCTTCCCCAGAAGCGCGTTTACTAGAAGCACTTTCCATCATGCTTGATCCACCCATCCGTCGCTTTAACCCAGAAACCCAAACCCGACGCCCACGTCGTGCCACACAAGAAGTTCCAGTGCGCCGTCGCACAGGAGATCATCACCCAATCCAAACACAAACTGAACCTGAACCCGGGATCCAACACCGTCCACGTACATGGGTGATTCTACAACCTGTGGATCCTTCTTCCAATTCCGATTCAAACACGTTTCAACCGGTGATTTATCCAGGTGGACGACAAGGACCAATTCCACGTGGCGTTGATTCAAGAGACTATTTTTTCGGACCGGGTTTTAACGAACTAATAGACCAAATAACGGAAAACGACCGGCAAGGTCCACCACCGGTGCCGGAAAGAGGTATAAACGCAATTCCAACAGTGAAAATAGAAAGCAAAAATCTGAAAGAGAATTCTCACTGTCCTGTTTGTCAAGAAGAGTTTGAAATTGGTGGTGAAGCGAGGGAGCTTCCATGTAAACATATATATCACTCTGATTGCATTGTTCCTTGGCTTAGACTTCACAATTCTTGTCCAATTTGTCGTCAAGAGATTCCTGTTTCTTCTGATGATGATGAAGATGAGTGTGGTGATGAAGGTGGTGGTGGTGGAGACTCTAATCCAAGGCGGCAATCTTGCTGCATTCTGTAA 891 0.4602 MSLSPPRERTNNQRRNFQLYYCFQCNRTVRVAPYNSSDLICPRCFGQFICEINIPRPRLVVDFTAHDPSPEARLLEALSIMLDPPIRRFNPETQTRRPRRATQEVPVRRRTGDHHPIQTQTEPEPGIQHRPRTWVILQPVDPSSNSDSNTFQPVIYPGGRQGPIPRGVDSRDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQEIPVSSDDDEDECGDEGGGGGDSNPRRQSCCIL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2254 296 MobiDBLite consensus disorder prediction 90 117 - -
Mtr3g2254 296 SMART ring_2 221 261 IPR001841 -
Mtr3g2254 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 281 - -
Mtr3g2254 296 PANTHER - 9 281 - -
Mtr3g2254 296 CDD RING-H2_RNF126_like 221 262 - -
Mtr3g2254 296 MobiDBLite consensus disorder prediction 88 126 - -
Mtr3g2254 296 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Mtr3g2254 296 SUPERFAMILY RING/U-box 202 268 - -
Mtr3g2254 296 Pfam Ring finger domain 220 262 IPR001841 -
Mtr3g2254 296 MobiDBLite consensus disorder prediction 267 296 - -
Mtr3g2254 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 268 IPR013083 -
Mtr3g2254 296 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2254 Mtr-Chr3 36172486 36174856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2254 193 296 C3H Transcription Factor Family AT1G68180 44.762 4.11e-25 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2254 K11982 - gmx:100787399 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2254 3 36172486 36174856 Mtr3g2254 3 36172486 36174856 ECH