Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2252 ATGGTTAAGTCAGAGACTAACAAGATCAAAAAAGAACCATCAAATTCAATCTCAGATAGTAGCAAGAAGAAGTACAAAGGAGTAAGAATGAGGAGTTGGGGTTCATGGGTATCAGAGATTAGAGCACCAAATCAAAAAACAAGAATTTGGTTAGGTTCTTATTCAACTGCAGAAGCTGCAGCTAGAGCTTATGATGCTGCACTTTTATGCCTTAAAGGTTCATCATCTGCTTCAAATCTCAATTTCCCTTTAACATCATCATCTTCACATTACAATATTCCTCAAGATATGTCTCCAAAATCAATTCAAAGAGTAGCTGCAGCTGCCGCGAATAGTTTCATCGACAACAATAATAATAATGTTAATGTTAATGTCAATGATAATGCTAACACTCCCTCTTCATCATCATTGGTATCATCTCCATCATCAATGGTTTCTTCTGACGATGTTTCTTCACTTATGTCATCTTTCGATCAAGTTAATGATGAATCGATGGCTATGATATCGGAAACTAATTGGTATGGATTAGAAGGTTTACAATCACCTAAATATGTTGATCAGATGTTGTTAAGTGCTTCTTTCTTTGATATTGATTCATCATCACATTTGCTTGGTGATGATCTATATGAAGAAAGTGATATTCCTTTGTGGAACTTCAGCTGA 663 0.3514 MVKSETNKIKKEPSNSISDSSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSSASNLNFPLTSSSSHYNIPQDMSPKSIQRVAAAAANSFIDNNNNNVNVNVNDNANTPSSSSLVSSPSSMVSSDDVSSLMSSFDQVNDESMAMISETNWYGLEGLQSPKYVDQMLLSASFFDIDSSSHLLGDDLYEESDIPLWNFS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2252 220 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Mtr3g2252 220 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Mtr3g2252 220 ProSiteProfiles AP2/ERF domain profile. 24 83 IPR001471 GO:0003700|GO:0006355
Mtr3g2252 220 SMART rav1_2 24 89 IPR001471 GO:0003700|GO:0006355
Mtr3g2252 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 10 220 - -
Mtr3g2252 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 220 - -
Mtr3g2252 220 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Mtr3g2252 220 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Mtr3g2252 220 SUPERFAMILY DNA-binding domain 24 83 IPR016177 GO:0003677
Mtr3g2252 220 Gene3D AP2/ERF domain 23 85 IPR036955 GO:0003700|GO:0006355
Mtr3g2252 220 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2252 Mtr-Chr3 36163068 36164077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2252 25 219 AP2-EREBP Transcription Factor Family AT1G21910 50.239 4.46e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr3g2252 AP2 4.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2252 - - cam:101495993 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2252 3 36163068 36164077 Mtr3g2252 3 36163068 36164077 ECH