Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2228 ATGCGTGCTAAAAAATTATACCAAGGGACGGCGGTTATGGATGCTTTGTCAAGGTGGAGGAATGTGCTCAACCAAGCTGCAAACTTGTCTGGTTGGGATGCTAACAATTTCAGGAGTGAAGCTGATCTGGTGAAGAAAATTGTTAAGGAAGTTTTGACAAAACTAGACAGCACACACTTATCTATTACTGAATTTCCAGTTGGTTTAGAATCACGCGTCGAAGAATTGATTGAGTTTATTGATGATCAATCAAATAAAGTTTGCATGATAGGGATTTGGGGAATGGGGGGATCAGGTAAAACAACCACAGCAAAAGCCATCTATAATCAAATCAATCGCAAATTTGCAGATAGAAGCTTCATTGAAAACATTAGAGAAATCTGTGAAAAGGATAATACAGGGATTATTCGTTTGCAAGAACAACTACTTTCAGATGTCTTAAAGATAAAGGTGAAGAAGATACATAGTATTACATCGGGGACTACTATGATCGAGAAAAGACTTCGAGGGAAAACAGTCCTGGTTATACTGGATGATGTGAGTAAGTTTGAGCAAATAAAAGCCCTATGTGGAAATCGTAAATGGTTTGGTACGGGAAGTGTATTAATTGTTACAACCAGAGATGTACACCTACTTAAATTGCTTAAAGTTGCACATGTTTGTACAATGAAGGAGATGGATGAAGATGAGTCCCTTGAACTTTTCAGTTGGCATGCTTTTAGAGAACCAAGTCCAACAAAATACTTTACTGAACTCTCTAGAAATGTTGTTGCTTACTGTGGAGGATTGCCACTTGCTCTTGAAATCCTTGGATCTTACTTATATGGAAGGACAAAAAGAGAATGGACAAGTGTATTGTCAAAACTAGAGAGAATTCCTAATGACCAAGTACAAGAGAAACTAAGAATAAGCTATGACGGTTTAAAGGATGATATGGAAAAGGATATATTTCTTGACATATGTTTTTTCTTTATCGGCAAGGACAGGGCCTATGTTACCAAGATACTAAATGGGCGTGGACTTTATGCTGACATTGGAATAACGGTTCTCGTAGAACGAAGCCTTGTAAAAATTGAAAAGAATAACAAACTTGGAATGCATGATCTGCTAAGAGACATGGGAAGAGAAATTGTCCGTCAGAGTTCAGTGAAAAATCCAGGGAAACGTAGTCGATTATGGTTTCATGAGGACGTGCATGATGTTTTGACAAAAAATATGGTAACAAAAACTGTGGAGGGATTGGCGTTTAAGTTGCAAAGAACCGACAGAGTTTGCTTCAGTACTAATTCTTTCAAGGAAATGAAGAAACTAAGACTTTTACAACTTGATTGTGTTAACCTCATTGGAGACTATGATTGTTTTTCCAATCAACTGAGATGGGTCAAATGGCAAGGATTTACTTTCAACAATATACCGGATGACTTTTATCAGGGAAATCTTGTTGCTATGGACTTAAAACACAGCAATATTAGACAAGTTTGGATTGAAACAACGTTGATGGAGAAGCTTAAATTTCTTAATCTCAGTCATTCTAAGTTCTTGAAAAACAGCCCCGACTTTTCAAAATTATGA 1572 0.3696 MRAKKLYQGTAVMDALSRWRNVLNQAANLSGWDANNFRSEADLVKKIVKEVLTKLDSTHLSITEFPVGLESRVEELIEFIDDQSNKVCMIGIWGMGGSGKTTTAKAIYNQINRKFADRSFIENIREICEKDNTGIIRLQEQLLSDVLKIKVKKIHSITSGTTMIEKRLRGKTVLVILDDVSKFEQIKALCGNRKWFGTGSVLIVTTRDVHLLKLLKVAHVCTMKEMDEDESLELFSWHAFREPSPTKYFTELSRNVVAYCGGLPLALEILGSYLYGRTKREWTSVLSKLERIPNDQVQEKLRISYDGLKDDMEKDIFLDICFFFIGKDRAYVTKILNGRGLYADIGITVLVERSLVKIEKNNKLGMHDLLRDMGREIVRQSSVKNPGKRSRLWFHEDVHDVLTKNMVTKTVEGLAFKLQRTDRVCFSTNSFKEMKKLRLLQLDCVNLIGDYDCFSNQLRWVKWQGFTFNNIPDDFYQGNLVAMDLKHSNIRQVWIETTLMEKLKFLNLSHSKFLKNSPDFSKL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2228 523 Pfam NB-ARC domain 70 299 IPR002182 GO:0043531
Mtr3g2228 523 SUPERFAMILY "Winged helix" DNA-binding domain 296 402 IPR036390 -
Mtr3g2228 523 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 523 - -
Mtr3g2228 523 Gene3D - 225 309 IPR042197 -
Mtr3g2228 523 Gene3D - 2 53 IPR035897 -
Mtr3g2228 523 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 523 IPR044974 GO:0006952
Mtr3g2228 523 Gene3D - 54 221 IPR027417 -
Mtr3g2228 523 PRINTS Disease resistance protein signature 89 104 - -
Mtr3g2228 523 PRINTS Disease resistance protein signature 167 181 - -
Mtr3g2228 523 PRINTS Disease resistance protein signature 260 274 - -
Mtr3g2228 523 PRINTS Disease resistance protein signature 498 514 - -
Mtr3g2228 523 SUPERFAMILY L domain-like 417 523 - -
Mtr3g2228 523 Gene3D Ribonuclease Inhibitor 397 523 IPR032675 -
Mtr3g2228 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 320 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2228 Mtr-Chr3 35903501 35907653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2228 67 522 WRKY Transcription Factor Family AT5G45050 31.006 2.61e-63 222