Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2210 ATGGCGCCCATAAAAAGGCATTTACATCAATGGAAGCATCCATTCGATTCTAATTATCCATTTGAAGCAGTATTTAATGGATCATGGCAACCTGTGGAACTCTTAAAAATAGAGTCAGGAAAAACAACCTTACGTTTCATTGATACTGAACAAATTCAAAGCACTTTGTCATCCGATATTCGGATAAGATCAAGGAAAGCTACTTCATCTGATTGCTCCAGCTTTTTACGACCTGGAATTGATATATCTATGCTATTAGGCTATCGATACAATGATAATTCAGATCAATTTAGGTCTATTCCAATGTGGATTGATGCAAGAATAAATTCTATACATAGACAACCTCACAAATCCGATCAATGTTCATGTCAATTTTATGTAAACTTTTATGACGATCAAGGTTCACTTGGTACAGAGGTAAAAACTCTTAATAAAGAGGTTAATGCAATTGGAATGGATCAAATTTTCATCCTCCAAAGGCTTCAACATAATACTTGTGAAGGCTTGTTAAAAGAAAATGATACCTCTGAAATTAAGCCTTATAGGTGGGATTCATCAGAAGATTGCTCTTCATTATCACAATCTAGATTACTTGTTGGGAAATTTTCATCTGATCTTTCGTGGTTTGTAATTACATCTTTTTTAAAGAAGGTTTCATTCCATATAAGATCTGTGCAAAACAAGATTGTGTATCAAGTTATGGGAAATGATACTGATATTATTAGTCCTTGGCTTATAAATGTTGTGAACTTCAGCTTAAAAAAGGAATCACTAGTACCTATTGTTTCTCAATTTGATGTATTTTATGATTATGATGGAGAAGAAGATGAAGCGCCACCAAATCCATCAAATGAAGTTGAAGGCTTGCGACGTTCGAAACGTAGGAATGTACAGCCTGAGCGTTACGTAGGTTGTGTTGTTGAGAAGTTGGAAGTGGGTAATTTTCGAACGTGTCCCTACAAGAGAACAACTTATATGATAGAAGATGAAAACTCTTCTTCAGATTCAGAAGAGGATGGTGGTAAGAGTGATCAAAAGGTTAATAAGGTGAATCATTGCAAAGCTATTAATGTGAACACAAGGAACAAAAATGATGATGGTGATGGCAAGTTTAAGGTACATAAAACTGATGACATTTCTTCCAAATATCATTATTTGACTAATTATATTTCTAGTGCAAAGAAGAATGGTGCTGATGTGTTGAATTTGGAGTACGGAAATGAGCCTACAACAATATCAAGTGATGAAGAAGTTGATGGTAATGTTACTTTGAGAGATTATAATAGTTTCTTCAAGGAGAAGATTAAGAGGAAGAGACTTCATGTTGTGGATGATATGGATTTTGAAACCAAATGGGAAGGGATACATTTCAAAAAGGGAGCTCCAACAGAAAATTTTCATTCGAGTTATTTGTCTAACAGAAGTCATGTTCATGAAGAACAAGATCATAAAGGCGGTAGAACATTCAATGCTGATGCCCGCAAGGAAATAATAGATAGTTACATGAAGAATTTCGATAGTCTACCAACTGAAGAAGAGCCTACTGTAAATGAGAACCGGAAGGAAACAAGCATGTTGGAGAAAAAGGAAGAAGAAAAAGTATCGAAAAGCGATGATGAGGAAGAAAATGCTGATGATTTGGATGCCTTGTGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAACTGCGGGTTCAAGTTCTGAAGTTGTAGCTGATACCAAGAAAGAATTCAATGAAAGTTGTGAACATGATTATAGATTGGATGAAGAAATTGGAATATACTGTCTTCGATGTGGATTTGTGAAAACTGCAATACGGGACATTTCTGAGCCATTTGTGGAATGCCCAAAGAGGTACAAAGAGGAGAAACAGTGCAGTGAAGAAAATAAGGAACATAAATCAGAGCCAAAAGTTGATGAAGATTATAATAATGATATGTTCTCGACTCATGTTACTGATCCTGATGAACCATTGACTAATGAAATCGACAATGTTTGGGAATTGATTCCTGAACTTGAAGAAAAGATGCATGAACACCAGAAAAAAGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTATGGAACCATCACTCATGGAAGAAAAATCCAACTCAAGTGGTGGCTGTGTTATATCACATGCTCCTGGAGCAGGAAAAACCTTTCTCATCATTTCTTTTCTTGTAAGTTACTTGAAGTTATTTCCAGGGAAACGACCTCTAGTCCTAGCTCCAAAAACCACACTCTACACGTGGCGAAAAGAGTTCAAAAAATGGAAGATTTCTGTGCCGGTTTATCTTATCCATGGCCGTCGAACCTCTCCAGGTTCAAGTTCGACGACACCAAAATCAATGATTCTTCCTGGATTTCCAAGACCTTCTAGTGATGTCAAACATGTTTTGGATTGTCTCAGCAAGATACAAAAGTGGCACTCACACCCTAGTGTTCTTGTCATGGGCTATACTTCATTTTTACAATTAATGAGATCAAAAGATACAAAATTCGAACACAGAAAATACATGGCTAAAGCATTGAGAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGCTGAGGAAATGTTTAATGAAACTTCCAACAGAATTGAGAATATTGCTCTCTGGCACATTGTTTCAGAACAATTTCTGTGAATATTTCAACACACTTTGTTTAGCTAGACCGAAATTTGTTCATGAAGTTCTACAAGAGTTAGATTCTAAATACCGAAGGAAAGGTGGAAAAATAGCGAAGAAAGAACGTCATTTGCTTGAGGCGCGCGCGAGAAAATTCTTTTTGAACAACATTGAAAAGAAAATTAACTCGGATATTGATGAGGAGAAGATGCAGGGTCTATATGTGCTGCGAAAAATCACTTCCAGTTTTATTGATGTGTACGACAGTGGAAATTCTTCTGAGACTCTTCCTGGTTTACAAATATATACATTGCTCATGAATACGTCCGACGAACAGCATGAGATTGTACAGAAACTTCAGAAGAAAATGGCCGAGAGTACCAGTTACCCTCTTGAGGTTGAGCTTTTGATAACACTCGGATCAATACATCCATGGTTGATCAAAACAGCTGCATCATGTGCAACTAAGTTTTTTGCGGAGGAAGAATTGAAGAAACTAGAAATAAGCAAATTTGATTTGAGAAAAAGTTCCAAAGTAAGATTTGTTTTGAGCCTAATCTCACGAGTAGTGAAAAATGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCTGTGAGATTCTTAATAGAGTTATTTGAGAAATATTTTCAGTGGCAAAATGGTAAAGAGATTATGGTACTAACCGGTGAGCTAGACTTGTTTGAAAGAGGGAAAGTGATAGATAAATTTGAAGATCAAAGCAGCGGTTCAAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGTATAAGTTTAACAGCAGCTTCTAGAGTGATTTTTCTGGACTCTGAATGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGACCGGGGCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACGACCGGGTCGATGGAAGAAGATAAGTATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATTTTTAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATGATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCACATGATTATGAAGAATGAAAAGGCTTCAACAATCTAA 3804 0.3651 MAPIKRHLHQWKHPFDSNYPFEAVFNGSWQPVELLKIESGKTTLRFIDTEQIQSTLSSDIRIRSRKATSSDCSSFLRPGIDISMLLGYRYNDNSDQFRSIPMWIDARINSIHRQPHKSDQCSCQFYVNFYDDQGSLGTEVKTLNKEVNAIGMDQIFILQRLQHNTCEGLLKENDTSEIKPYRWDSSEDCSSLSQSRLLVGKFSSDLSWFVITSFLKKVSFHIRSVQNKIVYQVMGNDTDIISPWLINVVNFSLKKESLVPIVSQFDVFYDYDGEEDEAPPNPSNEVEGLRRSKRRNVQPERYVGCVVEKLEVGNFRTCPYKRTTYMIEDENSSSDSEEDGGKSDQKVNKVNHCKAINVNTRNKNDDGDGKFKVHKTDDISSKYHYLTNYISSAKKNGADVLNLEYGNEPTTISSDEEVDGNVTLRDYNSFFKEKIKRKRLHVVDDMDFETKWEGIHFKKGAPTENFHSSYLSNRSHVHEEQDHKGGRTFNADARKEIIDSYMKNFDSLPTEEEPTVNENRKETSMLEKKEEEKVSKSDDEEENADDLDALWEEMNTALTSSYLLDGTAGSSSEVVADTKKEFNESCEHDYRLDEEIGIYCLRCGFVKTAIRDISEPFVECPKRYKEEKQCSEENKEHKSEPKVDEDYNNDMFSTHVTDPDEPLTNEIDNVWELIPELEEKMHEHQKKAFEFLWQNIAGSMEPSLMEEKSNSSGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKISVPVYLIHGRRTSPGSSSTTPKSMILPGFPRPSSDVKHVLDCLSKIQKWHSHPSVLVMGYTSFLQLMRSKDTKFEHRKYMAKALRESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYRRKGGKIAKKERHLLEARARKFFLNNIEKKINSDIDEEKMQGLYVLRKITSSFIDVYDSGNSSETLPGLQIYTLLMNTSDEQHEIVQKLQKKMAESTSYPLEVELLITLGSIHPWLIKTAASCATKFFAEEELKKLEISKFDLRKSSKVRFVLSLISRVVKNEKVLIFCHNLAPVRFLIELFEKYFQWQNGKEIMVLTGELDLFERGKVIDKFEDQSSGSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDDILREMVEEDKSKAIHMIMKNEKASTI* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2210 1267 Coils Coil 1267 1267 - -
Mtr3g2210 1267 Pfam Helicase conserved C-terminal domain 1070 1186 IPR001650 -
Mtr3g2210 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1252 IPR027417 -
Mtr3g2210 1267 MobiDBLite consensus disorder prediction 506 544 - -
Mtr3g2210 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 706 909 IPR014001 -
Mtr3g2210 1267 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1073 1234 IPR001650 -
Mtr3g2210 1267 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 1265 IPR044567 GO:0080188
Mtr3g2210 1267 MobiDBLite consensus disorder prediction 513 536 - -
Mtr3g2210 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 911 IPR027417 -
Mtr3g2210 1267 MobiDBLite consensus disorder prediction 625 649 - -
Mtr3g2210 1267 Gene3D - 989 1266 IPR027417 -
Mtr3g2210 1267 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 21 1265 - -
Mtr3g2210 1267 MobiDBLite consensus disorder prediction 273 293 - -
Mtr3g2210 1267 Gene3D - 652 953 IPR038718 -
Mtr3g2210 1267 SMART ultradead3 677 917 IPR014001 -
Mtr3g2210 1267 SMART helicmild6 1102 1187 IPR001650 -
Mtr3g2210 1267 Pfam SNF2-related domain 685 963 IPR000330 GO:0005524|GO:0140658
Mtr3g2210 1267 CDD SF2_C_SNF 1068 1198 - -
Mtr3g2210 1267 CDD DEXHc_ATRX-like 681 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2210 Mtr-Chr3 35742316 35747850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2210 1084 1205 RAD5 or RAD16-like Gene Family AT5G05130 34.959 5.62e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr3g2210 SNF2_N 4.3e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2210 K10875 - gmx:100811703 1348.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2210 3 35742316 35747850 Mtr3g2210 3 35742316 35747850 ECH
Mtr3g2210 3 35742316 35747850 Mtr5g2856 5 37156275 37163901 PCT