Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2205 ATGGAATCCGAGTTCCCCAACAAAGCATTAACCTCAACTCGTTTCTCCGACTTAAAACCACCACTCTCCGAGCCCGTTCTTCAAGCTCTCACAGACTCAAACTTTGATTTCTGCACCCCTGTTCAAGCCGCCACTATTCCCTTACTCTGCAGCTACAAAGACGTCGCAGTCGATGCCGCCACAGGTTCCGGTAAAACCCTAGCTTTCGTCATTCCACTTGTCGAAATTCTTCGCCGCAACGCTTCCAATCCCAAACCTCACCAGGTGCTTGGAGTGATTATATCTCCTACTAGGGAATTAGCGTCGCAAATATATCATGTTGCACAGCCTTTTATTTCGACTTTAGCTAATGTTAAATCAATGCTACTTGTTGGTGGAGTGGAAGTGAAAGCAGATATAAAGAAAATTGAGGAAGAAGGGGCAAATGTATTGATTGGCACGCCGGGGCGATTACATGATATTATGAATAGGATGGATATTTTGGATTTCAAAAGCTTTGAGATTTTGATTTTGGATGAGGCTGATAGACTATTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTGAGTTGCCTAAACTTCGAAGAACTGGCTTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGATTGAGGAATCCTGTGAGGGTTGAAGTTCGAGCTGAAACAAAAACAGCGAATGATTCTGCTTCATCAAAGAAAATAGAGTCTTCGAAGACACCTTCAGGTCTTCAAATTGAGTACTTGGAATGTGAGGCAGATAAGAAACCGTCACAGCTGGTAGATTTCCTTGTTAAGAACCGCTCAAAAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGACTGGTTCTTCCTCGCCTATCTGTTTTGAAAGGCTTCTCGTTGATCTCCCTTCATGGAAAGATGAAGCAGTCTGTCAGGGAGAAGGCGCTAACTTCATTTACATCCCTTTCAAACGGAATTCTTTTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTGTTCGTACATAGGGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGCCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCATATGTAGAATTCTTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGAATGTGCTCCGATAATGCACCTGATGTTATACCCGAGATTCGTTCTGCGGCAACAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGTGCTTATAAAGAGCATCATTGCTCTTATATTTTCAGGTGGAAAGAACTTGAAATTGGCAAATTAGCCACAGGACATGGCTTATTGCAACTTCCTTTAGTGCCAGAGATAAAACGCCACTCACTATCCACCGTGGGATTTGAACCAGTTAAAGATATCAATTTCGAGGAGATTAGGTTCAGGGATAAATCAAGGGAGAAACAAAGGAAGAAAAACCTGCAAGTAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTAAAAAACCAAAGAAAACTCCTGAAGTACCTACGGCCATGAGAAAGCAAACAGCCAAACAGAGACGTGCTAAGCAGACAGTTGAAGATGAAGAAGAGTTGACGCAAGAATACCGCTTGTTAAAGAAATTGAAGAAAGGGACCATAGATGAGGATGAATATGCCAAGTTGACAGGCACAGAGGATTTACTTTGA 1770 0.4237 MESEFPNKALTSTRFSDLKPPLSEPVLQALTDSNFDFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVIPLVEILRRNASNPKPHQVLGVIISPTRELASQIYHVAQPFISTLANVKSMLLVGGVEVKADIKKIEEEGANVLIGTPGRLHDIMNRMDILDFKSFEILILDEADRLLDMGFQKQINAIITELPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKTANDSASSKKIESSKTPSGLQIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDYWGLVLPRLSVLKGFSLISLHGKMKQSVREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERMCSDNAPDVIPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEIKRHSLSTVGFEPVKDINFEEIRFRDKSREKQRKKNLQVKKEAKEKEPKPKKPKKTPEVPTAMRKQTAKQRRAKQTVEDEEELTQEYRLLKKLKKGTIDEDEYAKLTGTEDLL* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2205 589 MobiDBLite consensus disorder prediction 504 558 - -
Mtr3g2205 589 Gene3D - 252 481 IPR027417 -
Mtr3g2205 589 Gene3D - 2 227 IPR027417 -
Mtr3g2205 589 Pfam Domain of unknown function (DUF4217) 417 472 IPR025313 -
Mtr3g2205 589 SMART DUF4217_3 413 476 IPR025313 -
Mtr3g2205 589 CDD SF2_C_DEAD 251 384 - -
Mtr3g2205 589 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 586 - -
Mtr3g2205 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 394 IPR027417 -
Mtr3g2205 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Mtr3g2205 589 PANTHER RNA HELICASE 25 586 - -
Mtr3g2205 589 SMART helicmild6 290 375 IPR001650 -
Mtr3g2205 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 419 IPR001650 -
Mtr3g2205 589 CDD DEADc_DDX55 26 224 - -
Mtr3g2205 589 SMART ultradead3 34 243 IPR014001 -
Mtr3g2205 589 MobiDBLite consensus disorder prediction 504 535 - -
Mtr3g2205 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Mtr3g2205 589 Coils Coil 539 559 - -
Mtr3g2205 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Mtr3g2205 589 Coils Coil 503 523 - -
Mtr3g2205 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2205 Mtr-Chr3 35655015 35660599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2205 13 384 Eukaryotic Initiation Factors Gene Family AT3G19760 29.947 1.01e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2205 K14809 - gmx:100801482 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2205 3 35655015 35660599 Mtr3g2205 3 35655015 35660599 ECH