Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2203 ATGGGTGGTAATACTACTTCTCCTTGTGCTTCATGCAAACTCCTTAGACGCCGTTGTGCTAAGGATTGTATCTTTGCTCCTTATTTCCCTTCACATGATCCTAAAAAATTTGCAATAGTTCACAAGGTTTTTGGTGCAAGCAACGTTAGCAAAATGCTCCAGGAACTTCCTATTCAACAAAGAGCTGATGCAGTAAGCAGCTTAGTATATGAAGCAAATGCAAGAGTGAAGGACCCTGTTTATGGTTGTGTTGGAGCAATATCATACCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCACAAGCAGAGATACTTTGCATCCAGATGAAACATGATGATCAGCCTCTAATGCAAAATCAAGAAATAGCCCTTGATCATAAACCTTATGATCTCCCTCAGTACTTCAACTTTCCTTCTTCAAGCAATGTAATTCATCATGATTCTTTCTCAAGAGAGAGAATTTTTTGA 480 0.3896 MGGNTTSPCASCKLLRRRCAKDCIFAPYFPSHDPKKFAIVHKVFGASNVSKMLQELPIQQRADAVSSLVYEANARVKDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMKHDDQPLMQNQEIALDHKPYDLPQYFNFPSSSNVIHHDSFSRERIF* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2203 159 Coils Coil 87 107 - -
Mtr3g2203 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 122 - -
Mtr3g2203 159 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Mtr3g2203 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 6 122 - -
Mtr3g2203 159 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2203 Mtr-Chr3 35633594 35634678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2203 1 131 AS2 family AT2G30130 79.259 2.57e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr3g2203 LOB 3.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2203 - - pop:7462094 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2203 3 35633594 35634678 Mtr5g2853 5 37116993 37118527 ECH
Mtr3g2203 3 35633594 35634678 Mtr3g2203 3 35633594 35634678 ECH
Mtr3g2203 3 35633594 35634678 Mtr5g2853 5 37116993 37118527 PCT