Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2199 ATGACTCCGAATTTGGAATGTCGCATGTACGAGGCAAGGTACCCGGAGGTAGACACGGCGGTGATGATACAGGTGAAGAACATCGCCGACATGGGTGCATACGTTTCACTTCTCGAATACAACAATATCGAGGGTATGATTCTGTTCTCCGAGCTTTCTCGCCGTCGAATTCGTAGTGTTAACAGTCTGATCAAGGTTGGTCGAACCGAACCGGTGATGGTTCTTCGTGTTGACAAAGAAAAGGGTTACATTGATCTTAGTAAACGTAGGGTTTCTGAAGAAGATATTCAAGCTTGTGAAGAAAGGTATAATAAGAGTAAACTTGTGCATTCTATTATGCGCCATGTTGCTGAAACCTTGGACCTTGATTTAGAGGAGCTTTATGTTCACATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGGCGTTCAAGATAGCTGTGGCCAATTCTGATACGGTTTTGAGCCCTCTAATGCGTGAAATCAAGGAAGTTGGTCCTGATGGGAAAGCGGTGACCAAGGTGGTACCTTCTGTGTCTGAAGAAATGAAGAATTCTCTACTGATGAACATTAGAAGACGAATGACCCCTCAGCCATTCAAAATCAGGGCGGACATTGAAATGAAATGTTTTCAATTTGATGGAATTATACACATTAAGGAGGCAATGCAGAAGGCTGAAGCTGCTGGAAATGATGACTGCCCTGTGGAAATTAAACTTGTTGCTCCCCCACTTTATGTGCTTACCACTCAGACCCTTGACAAGGAGCAAGGAAAATTGGTTCTACGCAATGCCATTGCTTGTTGCACTGAATCAATAGAAAAACATAAGGGTAAACTTATGCTGGTGAAGGAAATTAGAGCGGATGTCGATGGTGATGGCCCATTTCCAATTACTCCGATTCAGAATGAAAATAATGATGATGTCAGTAGCGATGAAGACAGTGAAGAGGAAGAAGATACTGGAATGGGCGAGGTTGATGTGGAGAATGGTAATGCGATAATGGAGTGA 1017 0.4317 MTPNLECRMYEARYPEVDTAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVNSLIKVGRTEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLDLDLEELYVHIGWPLYRKYGHAFEAFKIAVANSDTVLSPLMREIKEVGPDGKAVTKVVPSVSEEMKNSLLMNIRRRMTPQPFKIRADIEMKCFQFDGIIHIKEAMQKAEAAGNDDCPVEIKLVAPPLYVLTTQTLDKEQGKLVLRNAIACCTESIEKHKGKLMLVKEIRADVDGDGPFPITPIQNENNDDVSSDEDSEEEEDTGMGEVDVENGNAIME* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2199 338 Pfam Eukaryotic translation initiation factor 2 alpha subunit 127 257 IPR011488 GO:0003723|GO:0003743
Mtr3g2199 338 MobiDBLite consensus disorder prediction 309 327 - -
Mtr3g2199 338 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Mtr3g2199 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 2 338 IPR011488 GO:0003723|GO:0003743
Mtr3g2199 338 SUPERFAMILY Nucleic acid-binding proteins 13 94 IPR012340 -
Mtr3g2199 338 SMART S1_6 16 89 IPR022967 -
Mtr3g2199 338 MobiDBLite consensus disorder prediction 295 338 - -
Mtr3g2199 338 PANTHER BNAC04G04870D PROTEIN 2 338 - -
Mtr3g2199 338 Gene3D Translation initiation factor 2; subunit 1; domain 2 92 196 IPR024054 -
Mtr3g2199 338 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Mtr3g2199 338 SUPERFAMILY eIF2alpha middle domain-like 91 196 IPR024054 -
Mtr3g2199 338 SUPERFAMILY eIF-2-alpha, C-terminal domain 200 308 IPR024055 -
Mtr3g2199 338 Gene3D - 3 91 IPR012340 -
Mtr3g2199 338 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Mtr3g2199 338 Gene3D EIF_2_alpha 202 323 IPR024055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2199 Mtr-Chr3 35594047 35598503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2199 2 338 Eukaryotic Initiation Factors Gene Family AT5G05470 70.000 2.54e-162 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2199 K03237 - gmx:100805950 520.005