Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2188 ATGTCAAGCCCTAATTCCAGATCATTGAACTGGCACTACACTGAGCTTGATGATAGAGACCTAGAAATCAAAGGCAGAACACTTTTCTTCGTTATTGTACTCTTCTCAATTTTCCTTCTTGTTATCGTTCTCTTCTTCTACACACGTTGGGTCTGCCGCTACCATACTCACATCACCACGACATACTCCGCCTCCATCCACGCGCCGCCAGCTCAACCACCTCAAGGATTAGACCCTGCTGCAATCAAGAAACTGCCCATTATTCTTCATCAAGCTCCGACGGACCCCGAGAACGGCGCGTGGGAAGAGACTGAGTGTTGTATTTGTCTTGGAGAATTTAGAGACGGTGAGAAACTGAAGGTTTTACCAGGGTGTGAACATTATTTTCATTGTGATTGTGTTGATAAGTGGTTAACTCATCAATCTAGTTGTCCACTTTGTAGAGGTTCTCTCAAAGTTGAACCTTCTTTTCCTAAGATTTTGATTCAAGAACCACCCATTAGAATTGATATTCAATTCTAG 522 0.431 MSSPNSRSLNWHYTELDDRDLEIKGRTLFFVIVLFSIFLLVIVLFFYTRWVCRYHTHITTTYSASIHAPPAQPPQGLDPAAIKKLPIILHQAPTDPENGAWEETECCICLGEFRDGEKLKVLPGCEHYFHCDCVDKWLTHQSSCPLCRGSLKVEPSFPKILIQEPPIRIDIQF* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2188 173 Pfam Ring finger domain 105 148 IPR001841 -
Mtr3g2188 173 SMART ring_2 106 147 IPR001841 -
Mtr3g2188 173 SUPERFAMILY RING/U-box 100 155 - -
Mtr3g2188 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Mtr3g2188 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 163 IPR044675 -
Mtr3g2188 173 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Mtr3g2188 173 PANTHER RING-H2 FINGER PROTEIN ATL66 2 163 - -
Mtr3g2188 173 CDD RING-H2_PA-TM-RING 105 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2188 Mtr-Chr3 35473392 35474169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2188 2 156 C3H Transcription Factor Family AT3G11110 42.405 1.37e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2188 - - gmx:100803278 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2188 3 35473392 35474169 Mtr5g2839 5 36970250 36971025 PCT