Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2180 ATGAGTATGGAAAACTACAATGATTCTTCTGAGTGGCAGCATTTGAGCACAAACTGGTCTCAATACAGTAATGATCATTCACAATTTCCTGTGACTGTACCTACACAGATATTACCTCATAATATCTCTGACTCTTCTTCTGGTTCTTTTCAATATAGTGAATTTCAGTCATGGAATTTACCTATTGAAGGTAGTGTTGAAGATAGAGCAGCAAGTGCTTCCAAGAGTCATAGTCAAGCAGAGAAAAGACGTAGAGACAGGATTAATACACAGCTTGCTAATCTTAGAAAACTTATTCCCAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGATAGATCAAGTCAAAGATCTAAAGCGAAAAGCAATGGATGTTAGCAGAGTCATTACAGTTCCAACTGAAATTGATGAAGTATCAATAGACTATAACCATGTTGTTGAAGATGAAACCAACACTAACAAAGTGAACAAATTCAAAGACAACATCATCATCAAAGCTTCTGTTTGTTGCGACGATCGACCAGAATTGTTCTCTGAACTAATCCAAGTCCTCAAAAGTTTAAGACTTACAACAGTTAAAGCTGATATAGCAAGTGTTGGTGGCAGAATCAAAAGTATATTGGTGCTTTGTTCTAAGGACAGTGAAGAAAATGTTTGCATTAATACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACAAGAAGTAAGAGGCAGAGATTCTTTTTGCCTTCTCATTTTGTATAG 789 0.3638 MSMENYNDSSEWQHLSTNWSQYSNDHSQFPVTVPTQILPHNISDSSSGSFQYSEFQSWNLPIEGSVEDRAASASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVVEDETNTNKVNKFKDNIIIKASVCCDDRPELFSELIQVLKSLRLTTVKADIASVGGRIKSILVLCSKDSEENVCINTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2180 262 Gene3D - 66 129 IPR036638 GO:0046983
Mtr3g2180 262 PANTHER TRANSCRIPTION FACTOR BHLH51 25 261 - -
Mtr3g2180 262 CDD bHLH_AtAIG1_like 67 144 - -
Mtr3g2180 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Mtr3g2180 262 PANTHER TRANSCRIPTION FACTOR BHLH30 25 261 IPR045847 GO:0003700|GO:0006355
Mtr3g2180 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 125 IPR036638 GO:0046983
Mtr3g2180 262 CDD ACT_UUR-ACR-like 170 205 - -
Mtr3g2180 262 SMART finulus 78 127 IPR011598 GO:0046983
Mtr3g2180 262 Pfam Helix-loop-helix DNA-binding domain 75 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2180 Mtr-Chr3 35356686 35358785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2180 3 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.245 3.75e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g2180 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2180 - - gmx:100799687 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2180 3 35356686 35358785 Mtr3g2180 3 35356686 35358785 ECH