Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2178 ATGGCGGCCGCCGCCAACGCTCCGATCCTCATGCGTGAAGCTCTCACTTTGCCAAGCATTGGGATTAATCCACAGCACATAACATTCACGCATGTGACGATGGAATCTGATAAGTATATATGCGTTCGAGAAACTGCGCCGCAGAATAGCGTGGTTATTGTTGATATGAACATGCCAAATCAGCCTTTGAGGAGACCTATTACTGCTGATTCTGCTCTTATGAATCCTAATTCTAGAATTCTTGCTTTGAAAGCTCAACTCCAAGGAACAACTCAAGATCATTTACAAATATTTAATATTGAACTTAAAGCAAAGATGAAATCGTATCAGATGCCTGAGCAGGTAGTCTTTTGGAAGTGGATTAGCCCCAAGTTGTTGGGTCTTGTGACACAGACTTCTGTATACCACTGGTCAATTGAAGGCGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATCTGGCAAACAATCAAATAATTAATTATCGATGTGACCCTACCGAAAAATGGTTGGTCTTGATTGGTATTGCTCCTGGTTCCCCTGAGAGGCCACAATTGGTGAAAGGAAACATGCAACTATTCTCCGTGGAACAACAGCGCAGCCAGGCTCTTGAAGCTCATGCGGCTTCATTTGCTCAATTTAAAGTTCCTGGGAATGAAAATCCGTCTACTTTGATTTCTTTTGCCACCAAGACAGTTAATGCCGGTCAAGTTATATCCAAGTTGCATGTCATTGAGCTGGGTGCTCAGCCAGGGAAACCTTCATTTACAAAGAAACAAGCAGATCTGTTCTTTCCTCCTGATTTTGCTGATGATTTTCCAGTTTCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATTACCAAACTTGGTCTTCTATTTGTCTATGATTTGGAGACGGCTACTGCTGTTTATAGGAACAGAATCAGTCCAGATCCTATATTTTTGACGTCAGAAGCTACATCAGTGGGAGGCTTTTATGCCATTAACAGGAGAGGCCAGGTGTTACTGGCTACGGTTAATGAGCAAACAATTGTGAATTTTGTCAGTGGTCAATTAAACAATTTGGAGCTAGCAGTTAATCTTGCCAAGAGAGGAAATCTTCCTGGTGCTGAGAAGTTGGTAGTAGAACGTTTCCATGAACTATTTGCTCAAACAAAGTATAAAGAGGCAGCTGAGCTTGCTGCTGAGTCTCCGCAAGGAATCCTTCGTACACCCGATACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCCCCATTGTTGCAGTATTTTGGAACTCTTTTAACTAGAGGAAAGCTGAATGCCTTTGAATCACTCGAACTGTCACGGCTTGTTGTGAATCAGAACAAAAAAAATCTGTTGGAGAATTGGTTGGCCGAGGACAAGCTTGAGTGCAGTGAGGAGCTTGGAGATCTTGTTAAGACTGTGGACAATGATCTTGCTTTAAAAATATATATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTCGCTGAGAAAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGGTTGGATATACACCCGACTATCTCTTCCTCTTGCAATCGATACTCCGTACTGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAAGGTGGTTGTCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAACCTGATCCGTGAGGCAACTGCCTTTCTCCTAGATGTTTTGAAGCCAAACCTACCAGAACACGGGTTCCTTCAAACAAAGGTGTTAGAGATAAATCTTGTGACTTTCCCCAATGTTGCTGATGCAATTTTGGCTAACGGCATGTTTAGCCATTATGACCGTCCTCGGATTGCCCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCGTTGCAACATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGGCACTTGTTGAATTTTTTGGCACTCTATCAAAAGAATGGGCTTTAGAGTGTATGAAAGATCTATTGCTGGTCAATCTTAGAGGCAACCTACAGATAATTGTACAGGTTGCTAAAGAATACTGTGAACAACTTGGCGTTGATGCTTGCATAAAGATTTTTGAGCAATTCAGGTCATATGAAGGACTGTATTTTTTCCTTGGTTCATATTTGAGCTCCAGTGAGGATCCCGACATTCACTTTAAGTACATCGAGGCAGCAGCAAAGACTGGACAAATCAAAGAGGTCGAGCGTGTGACTAGAGAATCAAGTTTCTATGATCCTGAGAAAACAAAGAACTTTCTAATGGAAGCTAAGCTTCCAGATGCACGGCCACTAATTAATGTTTGTGACCGGTTCGGATTTGTTCCAGATCTAACACACTATCTATACACAAGTAACATGCTTCGCTACATTGAGGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGGCAGCTGCTTGATGATGAGTGTCCAGAAGATTTTATCAAAGGCTTAATTCTCTCTGTTCGTTCATTACTGCCAGTTGAGCCCCTTGTGGCTGAATGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAGTTTTTGGAACATCTAGTAAGTGAAGGAAGCCAGGATGTACATGTTCATAATGCACTGGGTAAAATCATCATTGATAGTAACAACAACCCAGAACATTTTCTCACTACAAACCCATACTATGATTCTCGAGTTGTGGGCAAATATTGTGAAAAGCGGGATCCCACGTTGGCAGTTGTGGCTTATAGGCGTGGAGTATGTGATGATGAACTTATCAACGTGACAAACAAAAACTCCTTGTTCAAACTACAAGCAAGATATGTTGTTGAGAGGATGGATGCTGACCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGACAACTTATTGATCAAGTTGTGTCTACCGCTCTTCCTGAAAGCAAGAGCCCTGAACAAGTATCTGCATCAGTGAAGGCTTTCATGACTGCTGATCTACCTCATGAGTTGATTGAGCTTCTTGAGAAGATTGTGCTTCAGAATTCTGCTTTCAGCGGGAACTTTAATCTTCAGAATCTTCTTATTTTGACAGCAATAAAGGCTGATTCTTCCAGAGTAATGGATTATGTCAATAGACTGGATAACTTTGATGGTCCTCAAGTTGGAGAAGTGGCTGTCGAGGCTGAGTTATATGAGGAAGCGTTTGCAATTTTCAAGAAGTTTAACTTAAATGTTCAAGCAGTTAATGTCTTGCTAGATAATATTCATAGCATAGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTTAGGGAAGGTCTAGTTAGTGATGCAATTGAGTCATTTATACGAGCAGATGATGCCACACAATTTCTGGATGTCATCCGAGCTGCTCAAGACGGCAATGCTTACCAGGACTTGGTGAGGTACTTGCTGATGGTAAGGCAGAAAACAAAAGAACCCAAGGTGGACAGTGAGCTTATTTATGCCTATGCCAAGATTGATAGGCTGAGTGATATTGAGGAGTTCATTCTAATGCCAAATGTAGCCAATCTTCAAAATGTTGGTGACAGATTGTATGATGAAGAGCTATACGAGGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCTAAATTAGCAGTCACACTTGTGAAGTTGAAACAGTTCCAAGGCGCTGTTGATGCAGCAAGGAAAGCTAACAGTGCAAAAACATGGAAGGAAGTTTGCTTTGCATGTGTTGATGAAGAGGAGTTCCGTTTGGCCCAAATATGTGGGCTGAACATTATCATTCAGGTGGATGACTTGGAAGAGGTAAGTGAATATTACCAAAATAGAGGCTGCTTCAATGAATTAATATCCCTCATGGAGAGTGGCCTAGGACTAGAAAGGGCACACATGGGCATATTCACGGAGCTGGGAGTTCTGTATGCTAGATACCGTCCGGAGAAGCTTATGGAGCATATCAAACTATTTGCAACCCGACTCAATATTCCTAAACTCATAAGAGCTTGTGATGAACAACAACATTGGAAGGAACTGACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACAACCATCATGAACCATTCGCCTGAAGCATGGGATCACATGCAATTCAAAGACGTTATTGCCAAAGTCGCTAATGTTGAGTTGTATTACAAGGCTGTTCACTTCTATTTGCAAGAGCATCCGGATCTTATCAATGATGTTCTGAATGTCCTTGCACTTCGGGTTGACCATGCACGGGTTGTTGATATCATGCGAAAGGCTGGTCACCTCCGTCTGGTCAAGCCATACATGGTTGCAGTTCAGAGTAATAATGTGTCTGCTGTTAATGAAGCCTTGAATGAGATATATGTGGAGGAGGAAGACTATGATAGATTGCGTGAGTCAATCGATTTGCATGATAATTTTGATCAAATAGGCCTTGCACAAAAGATTGAGAAGCACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCCATTGCCTTGTCAAAGAAGGACAACCTTTACAAAGACGCAATGGAAACAGCATCACAATCTGGTGAACGTGAACTTGCTGAGGAGTTGCTCGTTTATTTCATTGACCAGGGAAAGAAGGAATGCTTCGCCTCGTGTCTGTTTGTTTGCTATGATTTGATCCGGGTAGATGTTGCTCTTGAACTGGCTTGGATGCATAATATGATTGACTTCGCTTTCCCATATCTCTTACAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTTGTTAAGCACAAAATTGAATCCCAGAATGAAGTGAAGGCTAAAGAACAAGAAGAGAAGGAAGTAATTGCACAGCAGAATATGTATGCTCAATTATTGCCACTTGCTTTGCCTGCACCACCAATGCCTGGAATGGGAGGAGGAATGGGAGGAGGCTATGCCCCTCCCCCTCCAATGGGTGGCGGAATGGGGATGCCTCCAATGCCTCCTTTTGGCATGCCCATGGGCGGCTACTGA 5118 0.422 MAAAANAPILMREALTLPSIGINPQHITFTHVTMESDKYICVRETAPQNSVVIVDMNMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIELKAKMKSYQMPEQVVFWKWISPKLLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVEQQRSQALEAHAASFAQFKVPGNENPSTLISFATKTVNAGQVISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAEKREFDKILIYSKQVGYTPDYLFLLQSILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQALVEFFGTLSKEWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDACIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVAECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGVCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLNPDNTYRRQLIDQVVSTALPESKSPEQVSASVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADSSRVMDYVNRLDNFDGPQVGEVAVEAELYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAQDGNAYQDLVRYLLMVRQKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDEEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFATRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIAKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRVDVALELAWMHNMIDFAFPYLLQFIREYTGKVDELVKHKIESQNEVKAKEQEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGMGGGYAPPPPMGGGMGMPPMPPFGMPMGGY* 1706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2178 1705 SUPERFAMILY ARM repeat 346 501 IPR016024 -
Mtr3g2178 1705 SUPERFAMILY ARM repeat 458 794 IPR016024 -
Mtr3g2178 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 701 843 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 Pfam Clathrin-H-link 370 435 - -
Mtr3g2178 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1143 1284 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 PANTHER CLATHRIN HEAVY CHAIN 3 1703 - -
Mtr3g2178 1705 SUPERFAMILY ARM repeat 1197 1532 IPR016024 -
Mtr3g2178 1705 Coils Coil 1478 1498 - -
Mtr3g2178 1705 Coils Coil 1625 1645 - -
Mtr3g2178 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 552 698 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 SUPERFAMILY ARM repeat 1052 1196 IPR016024 -
Mtr3g2178 1705 Pfam Clathrin, heavy-chain linker 345 368 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Mtr3g2178 1705 SMART CLH_2 552 694 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 SMART CLH_2 1143 1284 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 SMART CLH_2 994 1139 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 SMART CLH_2 701 843 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 SMART CLH_2 1438 1597 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 SMART CLH_2 848 987 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 SMART CLH_2 1289 1435 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 Gene3D - 1543 1639 - -
Mtr3g2178 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1289 1435 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 994 1139 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 SUPERFAMILY Clathrin heavy-chain terminal domain 6 344 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Mtr3g2178 1705 SUPERFAMILY ARM repeat 902 1079 IPR016024 -
Mtr3g2178 1705 Gene3D - 1 378 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Mtr3g2178 1705 Pfam Region in Clathrin and VPS 851 984 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 Pfam Region in Clathrin and VPS 1148 1282 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 Pfam Region in Clathrin and VPS 994 1132 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 Pfam Region in Clathrin and VPS 1293 1432 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 Pfam Region in Clathrin and VPS 702 841 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 Pfam Region in Clathrin and VPS 558 691 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 Pfam Region in Clathrin and VPS 1441 1580 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 848 987 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 Pfam Clathrin propeller repeat 155 198 IPR022365 -
Mtr3g2178 1705 Pfam Clathrin propeller repeat 21 57 IPR022365 -
Mtr3g2178 1705 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1438 1581 IPR000547 GO:0006886|GO:0016192
Mtr3g2178 1705 PANTHER CLATHRIN HEAVY CHAIN RELATED 3 1703 - -
Mtr3g2178 1705 Gene3D Tetratricopeptide repeat domain 1058 1197 IPR011990 GO:0005515
Mtr3g2178 1705 Gene3D Tetratricopeptide repeat domain 1198 1537 IPR011990 GO:0005515
Mtr3g2178 1705 Gene3D Tetratricopeptide repeat domain 903 1057 IPR011990 GO:0005515
Mtr3g2178 1705 PIRSF CHC 4 1682 IPR016341 GO:0016192|GO:0032051|GO:0071439
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2178 Mtr-Chr3 35332053 35345030 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2178 K04646 - gmx:547986 3179.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2178 3 35332053 35345030 Mtr5g2835 5 36929015 36942437 ECH
Mtr3g2178 3 35332053 35345030 Mtr3g2178 3 35332053 35345030 ECH