Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2177 ATGAGTAAGCTTCAAAGTGAGGCAGTGAGAGAAGCAATCTCAGGAATCATGGCTGATTCCAAAGAGAAGAATCGCAAGTTTGTTGAGACCATTGAACTTCAAATTGGTCTCAAGAACTACGACCCGCAAAAAGATAAGCGTTTCAGTGGCTCCGTCAAGTTGCCTCATATCCCTCGTCCTAAGATGAAGCTTTGTATGCTCGGAGATGCCCAACACGTTGAAGAGGCAGAGAAGATAGGTTTGGAATCAATGGATGTTGAAGCCTTGAAGAAGCTCAACAAAAATAAGAAGTTGGTGAAAAAGCTAGCCAAGAAGTACCATGCTTTCTTAGCTTCTGAGGCAGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGGAAGTTCCCAACACTTGTCTCTCACCAAGAATCTCTCGAGGGAAAGGTCAATGAGACAAAAGCTATGGTGAAATTTCAGCTTAAGAAGGTGCTCTGTATGGGAGTAGCTGTGGGTAATGTTAGCATGGATGAAAAGCAAATCTTTCAAAATGTTCAACTCAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAACTGGCAGAATGTTCGGTGCTTGTATCTGAAGAGTTCAATGGGAAAATCTTACCGTGTCTTTTAA 651 0.4255 MSKLQSEAVREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKLCMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSYRVF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2177 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Mtr3g2177 216 SUPERFAMILY Ribosomal protein L1 3 216 IPR023674 -
Mtr3g2177 216 CDD Ribosomal_L1 9 215 IPR028364 -
Mtr3g2177 216 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 214 - -
Mtr3g2177 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 214 - -
Mtr3g2177 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Mtr3g2177 216 Gene3D - 1 119 - -
Mtr3g2177 216 Gene3D - 136 214 - -
Mtr3g2177 216 Pfam Ribosomal protein L1p/L10e family 22 210 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2177 Mtr-Chr3 35322000 35325945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2177 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 88.889 3.12e-129 361