Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2173 ATGGAAAACAAATTCCAAAACTCAACTTTACTTGAATTATCAGCAATAGATGATATTGAAGCTTTCAAAAGGGAAGTAGAAGAAAAGGGCTATGATGTAAATGAGGCAGGGTTTTGGTACTGTAGAAAAATAGGATCAAAGAAAATGTGTTATGAAAAGAGAACACCCCTTATGATTGCTTCTTTGTTTGGAAGCATTAGGGTGGTCAAATATATCATTGAAACAAACATGGTTAATGTGAACATGGCAATTGGTAGTGAAAATGTCACTGCATTACATTGTGCTGTTGCTGGTGGCTCTAAATCCAAATTTGAGATTGTTAAGCTCTTGCTTGATGCTGGTGCAGATGTTGATTTCCTTGATGAAGTAGTTAGGCAGAAACTTTCAGTGGCTAATTCAAAAGAATTAGTAGCTGAGAAGAAAGATTCAGGATATGCTATTGATACATCATTGCCTGATATAAACAATGGTGTTTTTGTAACAGATGAATTTAGAATGTATAGTTTCAAAGTAAAGACTTGTTCAAGGGGTTACACTCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCTAGGAGGAGAGATCCAAGGAAGTATCCTTATAGCTGTGTTCCGTGCCCCGAGTTTCGCAAAGGAACATGCCAGAAGAAAGATTCATGTGAGTATTCACATGGTATTTTTGAGTCTTTGCTTCATCCTTCACAATACAGAACAAGGCTTTGTAAAGATGAGATTAGGTGTACTAGGAAAGTGTGTTTCTTTGCACACAAACATGAAGAGTTGAGGCCTTTATATGCTTCTACTGGTTCAGCTATGCCTTCACAAGAATCATTACCAATTTCAAATGTTTCAACACCACCTATGTCTCCATTGGTGGCTGATTCATCTCCTAAGAATGGAAATTACATGTGGAAGAATAAAATCAATCTCACTCCACCTTCATTGCAGCTGAAAAATGCTTTGAGTGCAAGGGATTTGTATCAAGAAATGGACCTGTTACATGGTGTTTCAATGCAACCTTCAACTCCTAGCCAATTTCAATCTATGAGTAGGCTTCAGCTGAACCAAAATAGGAACCATGTTCAAGCAAGTTATCCATTCAACAACATTGTTTCATCTCCTATGAGAAAATCATCACCATTTGGATTTGATTCATCAGCTGCTATGGCTGCAGCAGTGATGAATTCAAGGTCTTCAGCCTTTGCGACACGAAGCCAAAGCTTTATGGATCGCGGTGTGTCAAGACAATATATCGGTGCTTCCGAATCCAACAGTAGAATGAACTCTGGTCTCTCAGATTGGATTTCAAATGATTGGGATGAGCTGCATAAGTTGAAAAAATCTGCTTCTTTTGGATTTAGAAATAATATGGCTGCTGCTTCGCCCGTTGCACGGCCTCAACATGCCGAACCGGATGTCTCGTGGGTTCATTCGCTTGTTCAAGAGGTTTCCTCTGAGAATTCTGAGATATTTGGTGCTGAGAGGCTACATTATGATCTCTATAAACAGAAGTTATCACCATGGACAGAGCAGATTGTAGCATAA 1554 0.39 MENKFQNSTLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFLDEVVRQKLSVANSKELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDSCEYSHGIFESLLHPSQYRTRLCKDEIRCTRKVCFFAHKHEELRPLYASTGSAMPSQESLPISNVSTPPMSPLVADSSPKNGNYMWKNKINLTPPSLQLKNALSARDLYQEMDLLHGVSMQPSTPSQFQSMSRLQLNQNRNHVQASYPFNNIVSSPMRKSSPFGFDSSAAMAAAVMNSRSSAFATRSQSFMDRGVSRQYIGASESNSRMNSGLSDWISNDWDELHKLKKSASFGFRNNMAAASPVARPQHAEPDVSWVHSLVQEVSSENSEIFGAERLHYDLYKQKLSPWTEQIVA* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2173 517 Gene3D - 6 144 IPR036770 -
Mtr3g2173 517 SMART ANK_2a 87 119 IPR002110 GO:0005515
Mtr3g2173 517 SMART ANK_2a 52 82 IPR002110 GO:0005515
Mtr3g2173 517 PANTHER UNKEMPT FAMILY MEMBER 336 515 IPR045234 -
Mtr3g2173 517 PANTHER UNKEMPT FAMILY MEMBER 5 336 IPR045234 -
Mtr3g2173 517 ProSiteProfiles Zinc finger C3H1-type profile. 203 230 IPR000571 GO:0046872
Mtr3g2173 517 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 5 336 - -
Mtr3g2173 517 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 336 515 - -
Mtr3g2173 517 SUPERFAMILY Ankyrin repeat 4 128 IPR036770 -
Mtr3g2173 517 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Mtr3g2173 517 Pfam Ankyrin repeats (3 copies) 43 118 IPR002110 GO:0005515
Mtr3g2173 517 SMART c3hfinal6 238 261 IPR000571 GO:0046872
Mtr3g2173 517 SMART c3hfinal6 203 229 IPR000571 GO:0046872
Mtr3g2173 517 Gene3D - 204 266 - -
Mtr3g2173 517 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2173 Mtr-Chr3 35303503 35305235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2173 8 488 C2H2 Transcription Factor Family AT5G12850 34.380 1.32e-103 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g2173 Ank_2 2.8e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2173 - - mtr:MTR_3g070880 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2173 3 35303503 35305235 Mtr5g2830 5 36840615 36843715 ECH
Mtr3g2173 3 35303503 35305235 Mtr3g2173 3 35303503 35305235 ECH