LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g2138	ATGGAGGCTAAAGAACAAGATGTTTCATTGGGAGCTAACAAATTCCCAGAGAGACAACCAATTGGTATTGCAGCTCAGAGCCATGATGATGGCAAGGACTACAAGGAACCACCACCAGCACCATTGTTTGAGCCTTCTGAACTCACTTCATGGTCTTTCTACAGAGCTGGGATAGCTGAGTTTGTAGCCACTTTTCTGTTCTTGTACATCACTATCTTGACTGTTATGGGTGTTAACAGGTCTGAGTCTAAGTGTAAAACTGTTGGTATTCAAGGAATTGCTTGGTCTTTTGGTGGCATGATCTTTGCTCTTGTTTACTGTACCGCTGGTATCTCTGGGGGTCACATAAACCCAGCAGTGACATTCGGTTTGTTCTTGGCAAGGAAATTGTCATTGACCAGGGCTGTGTTCTACATGGTTATGCAAACCCTTGGTGCTATCTGTGGTGCTGGTGTGGTTAAGGGTTTTGAGGGAAAGACTTTCTACACCAACAAAAACGGTGGTGCTAACTTTGTTGCCCCTGGTTACACTAAAGGTGATGGACTTGGAGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACCGTCTTCTCCGCCACTGATGCCAAGCGTAGCGCCAGAGACTCCCACGTTCCCATTTTGGCTCCATTGCCAATTGGGTTCGCTGTATTTTTGGTGCATTTGGCCACTATCCCAATCACTGGAACTGGTATCAACCCTGCTAGGAGTCTTGGTGCTGCAATTATCTTCAACAAAGACCTTGGTTGGGATGATCACTGGATTTTCTGGGTTGGACCATTCATTGGTGCAGCACTTGCAGCTCTTTACCACACAGTTGTGATCAGAGCCATTCCTTTCAAGTCAAGTAATTAA	873	0.4559	MEAKEQDVSLGANKFPERQPIGIAAQSHDDGKDYKEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSESKCKTVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQTLGAICGAGVVKGFEGKTFYTNKNGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHTVVIRAIPFKSSN*	291

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g2138	290	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	1	289	IPR034294	-
	Mtr3g2138	290	Pfam	Major intrinsic protein	47	277	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr3g2138	290	CDD	MIP	55	280	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr3g2138	290	Gene3D	Glycerol uptake facilitator protein.	40	289	IPR023271	-
	Mtr3g2138	290	TIGRFAM	MIP: MIP family channel proteins	59	277	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr3g2138	290	PRINTS	Major intrinsic protein family signature	55	74	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr3g2138	290	PRINTS	Major intrinsic protein family signature	97	121	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr3g2138	290	PRINTS	Major intrinsic protein family signature	134	153	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr3g2138	290	PRINTS	Major intrinsic protein family signature	184	202	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr3g2138	290	PRINTS	Major intrinsic protein family signature	220	242	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr3g2138	290	PRINTS	Major intrinsic protein family signature	260	280	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mtr3g2138	290	ProSitePatterns	MIP family signature.	115	123	IPR022357	-
	Mtr3g2138	290	SUPERFAMILY	Aquaporin-like	47	282	IPR023271	-
	Mtr3g2138	290	PANTHER	AQUAPORIN PIP 1-3	1	289	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g2138	Mtr-Chr3	34952229	34954378	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g2138	1	290	Major Intrinsic Protein MIP	AT4G23400	84.483	1.54e-170	471

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g2138	K09872		-	gmx:100791447	550.821

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr3g2138	3	34952229	34954378	Mtr3g2138	3	34952229	34954378	ECH
	Mtr3g2138	3	34952229	34954378	Mtr5g2795	5	36427705	36429835	PCT