Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2136 ATGGATGTGATAAAAACGCAACAAATCTCATCTCGTTCGATCGAGAAGGTGGTGGTTCATCCTCTAGTGTTACTCAGCATCGTTGATAACTACAATAGAGTCGCTAAGGATACTCGCAAGCGTGTTGTTGGTGTTTTGCTCGGTTCTACTTTCAAAGGCACCGTTGATGTTTCCAATAGCTACGCCGTGCCTTTTGAAGAAGATGACAAGGACCCCAGCATTTGGTTTCTCGACCACAATTATCACGAAGCAATGTTTTCCATGTTTAAGAGAATAAATGCAAAGGAGCATGTGGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGAGAAAATGACCTCGACATTCATGGGTTATTTAATGACTATGTTCCAAATCCCGTTTTGGTTATAATTGATGTTGAACCTAAGGAGTTGGGAATTCCAACAAAAGCATACTATGCTGTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCAATCAGAGATCGCTGCTCATGAGGTTGAGGAAATAGGAGTGGAACACTTGCTCAGGGATGTGAAGGATACAACCATTAGCACCCTTGCAACCGAGGTGAGCGGAAAACTCACAGCCTTGAAAGGTTTGGATGCAAGACTTAAAGAGATAAGGGGTTACCTTGATCTTGTTATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTATACCATCTGCAGGACGTGTTCAACCTGCTACCAAATCTCAATGTCTCTGATCTTATCAAGGCTTTTGCAGTGAAAACGAATGATATGATGCTGGTAATATACCTATCGTCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGCAGAAGACTCAAAACCAGCACCAGTACCAAGTGCAGCTGCATAA 930 0.4247 MDVIKTQQISSRSIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHEAMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRGYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKPAPVPSAAA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2136 309 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Mtr3g2136 309 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Mtr3g2136 309 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 1 309 - -
Mtr3g2136 309 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Mtr3g2136 309 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Mtr3g2136 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 309 - -
Mtr3g2136 309 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mtr3g2136 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2136 Mtr-Chr3 34935635 34941176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2136 10 248 Eukaryotic Initiation Factors Gene Family AT2G39990 28.807 1.43e-26 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2136 3 34935635 34941176 Mtr5g2794 5 36394191 36398163 ECH
Mtr3g2136 3 34935635 34941176 Mtr3g2136 3 34935635 34941176 ECH