Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2125 ATGAGATCAGATGAGAATGTTTCCAATCACAAAATGGAAAATGAAAAGATCAAATTTCCGGTTGGTTTTCGATTCTATCCGACCGATGAAGAGCTTATAAATCATTACCTTATCAAGAAGGTTGATGACAATAGCTTCTGTGCTATAGCTATTGCTGAAGTTGATATGAATAAGTGTGAACCATGGGATTTACCAGAGATGGCTAAAATGGGAGAAACAAAATGGTATTTTTTCTGCGTGAGGGAGAGAAAATACCCAACTGGTCGAAGGACCAATAGAGCTACTAATGCTGGCTATTGGAAAGCAACGGGCAAAGACAAAGAGATTTTCAAGGGAAATGCATTAATTGGGATGAAAAAAACATTGGTTTTCTACATAGGAAGAGCTCCGAGTGGTGAAAAAACCAATTGGGTCATGCATGAATACCGATTGAAGGGTAACACACTCTCTGAGCACAACCCATCCACAAATGGAATGAGTGAATGGGTTCTCAGTAGAGTCTTTGAGAAGAAAAATTGTGCAAAGAAAAAGGATGTTTCAAAACATGGAAGGTTTAACTCCTCTAGAGAAGGACCATCAAATACTAATGAATCTCTATTGCCTCAATTATTGGATTCTTCTCCATACAATAGTGAAAACCAAACCACTCTTTCTGATTTCTCTCAAAACAAGGTGAAACCAAAATCACAAGATGACAACATTGTTCATAACAATGAAACTAGTATCTTGAACATTTCATCCTCTTCAAAACAAATGGATGTTTATCCTTTAGCTGAAGTAATAGCTGCTGATTTGAACCAAACCTCAATGGTCGGAAATTCGTCAAACTTTTTCTTCTCTCAAGACCAATCGCTGTTGAGGATGCAGTTGGAGAATGAGAATATTGGAACAACCTCAAACCAAAGCATAAACCAAGAGTTTTCTTTTGGGAGATATTCTGATGATGATATCTCATCTGTGGTATATGGAAATGGCATGCTTCAAAGGTGGTTTGGGAATCAAGAACTGTCATCAGCTTCTACTGGACATGTGGTCAATGATAGCTTGAAGAATTTCTGA 1059 0.3758 MRSDENVSNHKMENEKIKFPVGFRFYPTDEELINHYLIKKVDDNSFCAIAIAEVDMNKCEPWDLPEMAKMGETKWYFFCVRERKYPTGRRTNRATNAGYWKATGKDKEIFKGNALIGMKKTLVFYIGRAPSGEKTNWVMHEYRLKGNTLSEHNPSTNGMSEWVLSRVFEKKNCAKKKDVSKHGRFNSSREGPSNTNESLLPQLLDSSPYNSENQTTLSDFSQNKVKPKSQDDNIVHNNETSILNISSSSKQMDVYPLAEVIAADLNQTSMVGNSSNFFFSQDQSLLRMQLENENIGTTSNQSINQEFSFGRYSDDDISSVVYGNGMLQRWFGNQELSSASTGHVVNDSLKNF* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2125 352 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Mtr3g2125 352 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
Mtr3g2125 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 349 - -
Mtr3g2125 352 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Mtr3g2125 352 MobiDBLite consensus disorder prediction 178 234 - -
Mtr3g2125 352 MobiDBLite consensus disorder prediction 186 224 - -
Mtr3g2125 352 SUPERFAMILY NAC domain 15 170 IPR036093 GO:0003677|GO:0006355
Mtr3g2125 352 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 5 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2125 Mtr-Chr3 34839777 34842376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2125 17 352 NAC Transcription Factor Family AT5G07680 47.059 3.97e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr3g2125 NAM 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2125 - - cam:101488836 450.669