Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2118 ATGATCTCTATCTCCCAAAGCCATGACATGAAGATTCTCAACTTTGGTACCATCGAAAATGTCCTTCACGTAGGACAAGACAAGTCTCACGTTGTTGTTCCTGTCGACAATATCGATAATGTTTCTCCTCGGAACTCTACGGTAGAGAATGTGGGAGTGGGAGTGGGAGTGTGTGAGAAAGAGAGAGTGTCTTCTGTGTCTGTGTCTGAATGTTGTGTGGAATTGGATCTGGAGAGTGTGGATAATGTTGATGATGGTGTGAAGAGAGATTGTAGGATTTGCCACCTCAGTATGGATATGAGAAACCATGATGATGACCAACATGAATCTGGGATTCCTATTGAACTAGGATGTTCCTGTAAAGATGATTTGGCTGCTGCCCATAAACAATGTGCTGAAGCTTGGTTTAAGGTCAAGGGTAACAAAACTTGTGAAATCTGTGGATCCATTGCTAGAAATGTATCTGGTATAGTTGAAGTTGAAATGACAGAACAGTGGAGTGAAGCTAATGATGCATCCGTTCTACCACCAACTAGACGTTCCCCACCGGTAGAAAATCAACGCCTACTCCACCGGTTCTTGAATTTCCTACTTGCCTGTATGGTTATTGCCTTTGTCATATCCTGGCTTTTTCGCTTCTATTTGCATTCCTGA 654 0.4281 MISISQSHDMKILNFGTIENVLHVGQDKSHVVVPVDNIDNVSPRNSTVENVGVGVGVCEKERVSSVSVSECCVELDLESVDNVDDGVKRDCRICHLSMDMRNHDDDQHESGIPIELGCSCKDDLAAAHKQCAEAWFKVKGNKTCEICGSIARNVSGIVEVEMTEQWSEANDASVLPPTRRSPPVENQRLLHRFLNFLLACMVIAFVISWLFRFYLHS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2118 217 Pfam RING-variant domain 91 147 IPR011016 GO:0008270
Mtr3g2118 217 SUPERFAMILY RING/U-box 87 150 - -
Mtr3g2118 217 PANTHER ZINC FINGER, RING-CH-TYPE 39 217 - -
Mtr3g2118 217 SMART ringv_2 90 148 IPR011016 GO:0008270
Mtr3g2118 217 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 39 217 - -
Mtr3g2118 217 ProSiteProfiles Zinc finger RING-CH-type profile. 83 154 IPR011016 GO:0008270
Mtr3g2118 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2118 Mtr-Chr3 34712602 34715779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2118 57 217 C3H Transcription Factor Family AT5G05830 56.213 3.83e-51 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2118 - - gmx:100818979 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2118 3 34712602 34715779 Mtr5g2770 5 36130146 36132778 ECH
Mtr7g1547 7 30689131 30693039 Mtr3g2118 3 34712602 34715779 ECH
Mtr3g2118 3 34712602 34715779 Mtr3g2118 3 34712602 34715779 ECH