Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2102 ATGGCACCTCCTTCAGATATTAATATTCTTTCTCACCCTTGCATATATGGGGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGATCCAATAGAGGAAGGGGTGGTGGTCATCTTTTACAGCAACCTGTAGACGAAAACATGGCTTGGCGAGCTCCGCCTAGATCCTTGGATAACCGTGCTAGAACTAAGAAGGAGGAAGAGGATTTGAACAACGCAATTGCACTTTCTTTAAGTGAAGATTTAAAGATACCAGCAGGATATAGATGGCGAACGGGAACTGATGATGATTATGCAAAAGGACTCCAGGATCGCATGCACTCATCTCTACACCCTCCATGCGCCCCTATACCTTTTTATCCCCGCGGATACAGCATGCCATCGCATAACAGAATATGTGGAGGGTGCAACAAGGAGATACTCTACGGTAATTGTTTGGGAGTCGAACATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCATCATCCTATTACCGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTATTGTTTTAAAGAATTGAGCCATCCTAAATGTGAAGTTTGCCGTCATTATATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGTGTCACCCCTATTGGAACCAAAAATACTGTCCGTCTCATGAACATGATAATACATCTCGCTGTTGTAGCTGTGAAAGATTAGAGTCTCGGGGCGAAAGATACTTTAGATTGGACGATGGACGGATTTTGTGCTTTGAATGCATGGAATCTGCTATAACAGATACTGGTGAATGTCAACCTCTTTATCATGCTATTAGAGACTATTATGAAGGAATGAATATGAGAATCGATCAACAAATCCCTATGCTTCTAGTTGGAAGAGAAGCACTTAATGAAGCCATCGTTGGAGAGAAGAATGGTTTCCATCACATGCCAGAAACAAGAGGGTTATGCCTTTCCGAAGAACAGACAGTTGCCAGTGTACATAGATGGTCAAAAATTGGAGGTCATCGATTAATAGGGATGCGAAGTCAACCTCAAAAGTTGATTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTTGCACACGAGTTGATGCATGGTTGGTTACGCCTTAAAGGTTACCGCAACCTTGATCCTGCAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGAAGCAGAAGTTATGTCGGGTTCTAGAACCATGGCATCAACATCAGCCGCAGCTTCTTCTTCTTCTTCTTCTACCTCCACCTCCTACTCATCAAAGAAAGGTGCGATATCCAAAGTTGAGAATAAATTGGGTGAATTTTTCATGAACCAGATTGCCAATGATTCTTCTCCAGCTTATGGTGGAGGCTTTAGATCGGCTAATGCAGCTGTTAATAAATACGGTTTACGTTGTACTCTCGACCATATTCGCTTGACTGGTCAGTTCCCACTGTAA 1542 0.4189 MAPPSDINILSHPCIYGDFSSSYSERKSGFMKWFGKIFKIGSNRGRGGGHLLQQPVDENMAWRAPPRSLDNRARTKKEEEDLNNAIALSLSEDLKIPAGYRWRTGTDDDYAKGLQDRMHSSLHPPCAPIPFYPRGYSMPSHNRICGGCNKEILYGNCLGVEHSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCRHYIPINGSGLIEYRCHPYWNQKYCPSHEHDNTSRCCSCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGFHHMPETRGLCLSEEQTVASVHRWSKIGGHRLIGMRSQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLEAEVMSGSRTMASTSAAASSSSSSTSTSYSSKKGAISKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRCTLDHIRLTGQFPL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2102 513 Pfam LIM domain 145 198 IPR001781 -
Mtr3g2102 513 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Mtr3g2102 513 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Mtr3g2102 513 CDD LIM 172 227 - -
Mtr3g2102 513 CDD LIM_DA1 145 197 - -
Mtr3g2102 513 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 513 - -
Mtr3g2102 513 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Mtr3g2102 513 Gene3D Cysteine Rich Protein 140 202 - -
Mtr3g2102 513 Pfam Protein DA1 294 508 IPR022087 -
Mtr3g2102 513 SMART lim_4 144 196 IPR001781 -
Mtr3g2102 513 PANTHER PROTEIN DA1-RELATED 2 20 513 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2102 Mtr-Chr3 34546050 34550071 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g2102 DA1-like 8.3e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2102 - - gmx:100798829 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2102 3 34546050 34550071 Mtr3g2102 3 34546050 34550071 ECH