Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2076 ATGGAGGAATCACTAAATATGATGTGGATGAAAAGGAAACAAATCTTGCACTCACACAATGAAGTAGTACCATCATTTGGAACCATCAACAATAGGTCTTGGGAGGAAAAAGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGATGTATATGGCCTCCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTTTAGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCTAAGCTCAAACAAAGTCTTAACCACCATAATGAATTAGAACTTCATTCTCATCACAAAAATCATTTTACAACAAGCAGAGATAACTCTTCTACTTGGCCATCAACTACATATACACAAGAAAACTGTTTTCAGCCAAACATGTCTTCATATTCTTCTTCAATTAAATGGGGGAATAACCACAAGGAGTCTCTTGATTCTGAACAAAAAGGGCTAGCTAATGCAAAGGAGCAAATTTTCAAAGGTTATGGTTGTAATGATTATGTTGAAACAAGTTTGTCTATGGGACAAAATAATTCAATGTTTGGCCAAAAATTGCAAACTGAGGATGATTCATGTGGTGGGGACAAAGGCATAAATTATAAAAGACCAAAGACAGCTTCCATTTCTTCTTCACTGCCTGTCTTGCTGAAGCCATGTTTGAATGATAGATGTTTAACTTTTCAGTCTGCAGAGTTTGTAATTGGAGTTAAGCCTGGAATAGAAGACTTGGATCTTGAACTCAGGCTTGGGAAACTAACACAGAAAGTTTAG 783 0.3704 MEESLNMMWMKRKQILHSHNEVVPSFGTINNRSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRAKLKQSLNHHNELELHSHHKNHFTTSRDNSSTWPSTTYTQENCFQPNMSSYSSSIKWGNNHKESLDSEQKGLANAKEQIFKGYGCNDYVETSLSMGQNNSMFGQKLQTEDDSCGGDKGINYKRPKTASISSSLPVLLKPCLNDRCLTFQSAEFVIGVKPGIEDLDLELRLGKLTQKV* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2076 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Mtr3g2076 260 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Mtr3g2076 260 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 260 - -
Mtr3g2076 260 MobiDBLite consensus disorder prediction 98 117 - -
Mtr3g2076 260 Pfam C2H2-type zinc finger 57 81 - -
Mtr3g2076 260 PANTHER OS07G0101800 PROTEIN 1 260 - -
Mtr3g2076 260 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2076 Mtr-Chr3 34211895 34213198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2076 33 130 C2H2 Transcription Factor Family AT2G37740 51.020 4.60e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g2076 zf-C2H2_6 4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2076 - - aprc:113851273 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2076 3 34211895 34213198 Mtr5g2739 5 35719543 35720247 PCT