Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2072 ATGGCAAATCGTTGGTGGACTGGAAATGTGGCTATGGGTCATAGAGAATCAATGCCTTCATCACCATCATCACTTCAACATCTGAAAAGAGAGCAAGAGTTGATGGAAAACAACAACAACAACGCGAACTCAACTCCAACAAACAGCAGCAACAGCAACAACAACAATAATGAAGAGGAAGACAACAACAATGAAGAACAAAACCCATCTGAGCCAGGCAGTAGCAGTGGTGGTCGGAGGCCACGTGGGAGACCACCAGGATCCAAAAACAAACCCAAACCACCCATTGTTATAACCAAAGAATCCCCAAATGCGCTAAGAAGCCATGTCTTGGAAATCAGCAGTGGTAGTGATGTGGCGGAGAGTATTGCCACCTTTGCTAACCGCCGTCACCGCGGTGTGTCGGTTTTGAGTGGGAGTGGCATTGTAGCTAATGTAACCCTTAGACAGCCGGCTGCTCCTGGTGGTGTTATTACTCTTCATGGAAGATTCGAGATACTTTCACTTTCGGGAGCTTTTCTACCTCCGCCTTCTCCGGCTGGAGCGACTGGATTAACTGTTTATTTAGCTGGTGGTCAGGGGCAGGTTGTTGGTGGTTCTGTTGCAGGTCCTTTGGTTGCTTCTGGACCTGTTATGGTTATAGCTGCTACTTTTGCTAATGCTACCTATGAGAGATTGCCCTTGGAGGATGAACAAGGTGGTGGTGATCAAGAGGAAATGCAAGTTCAAGTTCAACAATCTGGTGTGGATTCAGCAACTGTTGCAGCTGCAGTTACTAGTACTTCTTCTCAAGGTTTGGAATTGGGTGAGCATCATCAACAACTACAACAGGTTTCAATGCCTATGTATAATTTGCCTCCAAATTTGTTGCATAATGGTACTCAAATGCCTCATGATGTGTTTTGGGGTCCTCCACCTCCTCGTCCTCCTCCTTCTTTCTGA 942 0.4639 MANRWWTGNVAMGHRESMPSSPSSLQHLKREQELMENNNNNANSTPTNSSNSNNNNNEEEDNNNEEQNPSEPGSSSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISSGSDVAESIATFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLSGAFLPPPSPAGATGLTVYLAGGQGQVVGGSVAGPLVASGPVMVIAATFANATYERLPLEDEQGGGDQEEMQVQVQQSGVDSATVAAAVTSTSSQGLELGEHHQQLQQVSMPMYNLPPNLLHNGTQMPHDVFWGPPPPRPPPSF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2072 313 MobiDBLite consensus disorder prediction 35 58 - -
Mtr3g2072 313 ProSiteProfiles PPC domain profile profile. 103 241 IPR005175 -
Mtr3g2072 313 Coils Coil 25 45 - -
Mtr3g2072 313 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 219 IPR005175 -
Mtr3g2072 313 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 313 IPR014476 GO:0003680
Mtr3g2072 313 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 313 - -
Mtr3g2072 313 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 231 - -
Mtr3g2072 313 CDD DUF296 107 218 IPR005175 -
Mtr3g2072 313 Gene3D - 106 245 - -
Mtr3g2072 313 Coils Coil 48 68 - -
Mtr3g2072 313 MobiDBLite consensus disorder prediction 14 28 - -
Mtr3g2072 313 MobiDBLite consensus disorder prediction 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2072 Mtr-Chr3 34164691 34166889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2072 1 313 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 54.655 2.22e-81 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2072 - - gmx:102667174 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2072 3 34164691 34166889 Mtr3g2072 3 34164691 34166889 ECH