Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2067 ATGTCAGAGACAACATCTTATTGGTGTTATAGATGCAATCGTTTTGTAAGATTAAGCAGACAGGAAACCGTCGTCTGCCCTGATTGCGACGGCGGTTTCCTCGAAGAAATTGAACAACCTCCACAAGTTGATTCCCGCCGCCGACGTTTCCCAGCCGCCGCCATGTACATGATCGGTCAACGTCCAAATTCAGATCATAATCATAATGGTTCTCGTCCATCTTTCCTCCGTAGAACCCGCCGCAACGGTGGTGACCGGTCACCTTTCAATCCGGTCATTGTCCTCCGTGGCGGTGGCTCAACAGAGGCAGCCACAGAAGCCGGTAACAACGGTGGAGGAGAAAGAGGAGAGAGCCGTGGGTTTGAGTTATTTTATGATGATGGTGCTGGTTCTGGTTTAAGACCATTACCACCAAGTATGTCAGAGTTTTTGCTTGGATCTGGTTTTGATAGATTATTGGAACAGCTTTCACAGATTGAGATCAATGGTATTGGAAGATATGAACATCCACCAGCATCAAAAGCTTCTGTTGATTCATTACCAACTCTTGAAATTGATAATACTCATTTGGAAATGGAATCACATTGTGCTGTTTGTATGGAAGCTTTTGAGTTAGGTACTGTTGTTAGAGAAATGCCTTGTAAGCATATTTATCATCCTGATTGTATTTTACCTTGGCTTGCACTGCATAATTCGTGTCCGGTTTGTAGACATGAGTTACCGACTGATTCTGATGCTGGAAATGGTAATCAATTGCAATCGCAATCACAATCACAATCATGGTCGCAGGTGGAGTCGCAGCAATCGGTTGGTTTGAATGAGGAAGAGAGTAATGTTGGGTTGACTATTTGGAGATTGCCTGGTGGTGGTTTTGCTGTGGGGAGATTTTCGGGTGGGAGGAGAGGTGCTGAGAGAGAGTTACCTGTTGTTTATACTGAAATGGATGGTGGGTTTAATAATGGTGGTGAACCTAGGAGGATTTCTTGGTCTTCTAGAGGGAGTAGAGAAAGACAAAGAGGTGGTGGTTTGAGAAGGTTTTTTGGGAGTTTCTTTGGTTGTTTTGGTGTTGGTGGTGGAGTTGGGAATCAACGGTCTGTTATGGGTAGAGAGTTGAGGTCTGTGAGGACCAATTCGTCGCATTCTTCAAATATGGATCCCTCTCCGCGGTCGAGAAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGGTCATGGTGA 1218 0.4499 MSETTSYWCYRCNRFVRLSRQETVVCPDCDGGFLEEIEQPPQVDSRRRRFPAAAMYMIGQRPNSDHNHNGSRPSFLRRTRRNGGDRSPFNPVIVLRGGGSTEAATEAGNNGGGERGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKASVDSLPTLEIDNTHLEMESHCAVCMEAFELGTVVREMPCKHIYHPDCILPWLALHNSCPVCRHELPTDSDAGNGNQLQSQSQSQSWSQVESQQSVGLNEEESNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGSRERQRGGGLRRFFGSFFGCFGVGGGVGNQRSVMGRELRSVRTNSSHSSNMDPSPRSRRTWSMDVNSGMRSW* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2067 405 MobiDBLite consensus disorder prediction 371 405 - -
Mtr3g2067 405 Pfam Ring finger domain 195 237 IPR001841 -
Mtr3g2067 405 Pfam zinc-ribbon 5 37 IPR039525 GO:0061630
Mtr3g2067 405 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Mtr3g2067 405 Pfam Protein of unknown function (DUF1117) 279 383 IPR010543 -
Mtr3g2067 405 SMART ring_2 196 236 IPR001841 -
Mtr3g2067 405 CDD RING-H2_RNF126_like 196 237 - -
Mtr3g2067 405 MobiDBLite consensus disorder prediction 246 269 - -
Mtr3g2067 405 SUPERFAMILY RING/U-box 177 243 - -
Mtr3g2067 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 243 IPR013083 -
Mtr3g2067 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 351 - -
Mtr3g2067 405 MobiDBLite consensus disorder prediction 321 340 - -
Mtr3g2067 405 MobiDBLite consensus disorder prediction 60 117 - -
Mtr3g2067 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2067 Mtr-Chr3 34131910 34134148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2067 133 245 C3H Transcription Factor Family AT1G26800 41.593 4.62e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2067 - K11982 gmx:100807324 531.561