Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2066 ATGAACACAAAAACCTCTCCCCATGTTCTTGTTCCTCCTATAACAATTATCCTTTTCATTTTCATGATGTTCCTACAAATCCAAACAAGTACTACTTCTTCTCTCTCATCTCCCAAACAAAAACCTTTCATATTGCCTTTAAAAGTTCAAACACTACCACATGGCACAATTTCACTTCCAAAACCTTCTTCAAAACTCTCTTTTCAACACAATGTAACCTTAACAGTTTCACTAACACTAGGCTCACCCCCACAGAATGTTACCATGGTCCTCGACACAGGGAGTGAACTCTCATGGCTTCATTGCAAAAAACTTCCAAATTTAAACTCCATTTTCAACCCTCTACTTTCTTCTTCTTACACCCCCACCCCATGCACCTCACCCATTTGCATTACCCGAACCCAAGACTTCCCCGTACCTGTTCAATGCGACCCGAAGAAACTCTGCCACGCTACAATCACCTATGCTGACTCCACCTACATCGAAGGAAACCTCGCCACTGAGACTTTCTTCGCCGGTGGATCAGCACAACCCGGAACCATATTCGGGTGTATGGATTCCGGGTTCAGCTCAAATTCAAACGAGGACTCCAAAACAACCGGGTTAATGGGTATGAACCGTGGGTCTCTCTCATTTGTAACCCAAATGGGATTACCCAAATTCTCCTATTGCATCTCCGGCAAAGACTCCACCGGCGTTTTACTCTTCGGCGACGCGAATATCAAGTGGGTCGGGCCATTGAAATACACACCAATGGTAAAAATCACAACCCCATTACCCTATTTCGATCGAGTCGCATACACAGTACGACTCGAGGGAATACGGGTCGGGAAGAAGCTGCTCCAATTACCCAAAACAATTTTCGCACCGGATCATACCGGTGCGGGTCAGACAATGGTGGATTCGGGTACACAGTTCACGTTTCTTTTGGGACCGGTTTACAGTGCTTTAAGACAAGAATTTGTAGAACAAACAAAAGGAGTGTTGACCCTTTTGGAAGACACAAATTTTGTCTTCCAAGGTGCAATGGATTTGTGTTACCGTATCGGGTCGGGTTCGGTTCTTCCAACGTTACCGGCGGTGACACTTGTGTTTGAAGGGGCGGAGATGAGTGTTTCAGGTGAGAGACTATTATATAAAGTTGCTGACGTGGCATTAAAAGGGAATAATAATCATAGTAATGATTTGGTATATTGTTTCACGTTTGGAAATTCAGATTTGTTGGGAATTGAGGCATATATTATTGGACATTATCATCAAATGAATGTGTGGATGGAGTTTGATTTGGTCAACTCTAGAGTTGGATTTGCTGATACAAAATGTGAACTTGCAAGTCAACGACCAGCCATGCATTTTACCGAACCAAGACACAGACGAAATATACGTGGCTGTTGA 1395 0.4358 MNTKTSPHVLVPPITIILFIFMMFLQIQTSTTSSLSSPKQKPFILPLKVQTLPHGTISLPKPSSKLSFQHNVTLTVSLTLGSPPQNVTMVLDTGSELSWLHCKKLPNLNSIFNPLLSSSYTPTPCTSPICITRTQDFPVPVQCDPKKLCHATITYADSTYIEGNLATETFFAGGSAQPGTIFGCMDSGFSSNSNEDSKTTGLMGMNRGSLSFVTQMGLPKFSYCISGKDSTGVLLFGDANIKWVGPLKYTPMVKITTPLPYFDRVAYTVRLEGIRVGKKLLQLPKTIFAPDHTGAGQTMVDSGTQFTFLLGPVYSALRQEFVEQTKGVLTLLEDTNFVFQGAMDLCYRIGSGSVLPTLPAVTLVFEGAEMSVSGERLLYKVADVALKGNNNHSNDLVYCFTFGNSDLLGIEAYIIGHYHQMNVWMEFDLVNSRVGFADTKCELASQRPAMHFTEPRHRRNIRGC* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2066 464 Pfam Xylanase inhibitor N-terminal 76 238 IPR032861 -
Mtr3g2066 464 Gene3D Acid Proteases 241 448 IPR021109 -
Mtr3g2066 464 PANTHER ASPARTYL PROTEASE-RELATED 18 448 IPR001461 GO:0004190|GO:0006508
Mtr3g2066 464 Pfam Xylanase inhibitor C-terminal 266 437 IPR032799 -
Mtr3g2066 464 Gene3D Acid Proteases 67 237 IPR021109 -
Mtr3g2066 464 ProSiteProfiles Peptidase family A1 domain profile. 74 437 IPR033121 -
Mtr3g2066 464 SUPERFAMILY Acid proteases 75 441 IPR021109 -
Mtr3g2066 464 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 89 100 IPR001969 GO:0004190|GO:0006508
Mtr3g2066 464 CDD pepsin_A_like_plant 73 441 IPR034161 -
Mtr3g2066 464 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 18 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2066 Mtr-Chr3 34118066 34121820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2066 75 253 Miscellaneous Gene Families AT1G44130 30.570 1.89e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2066 - - gmx:100783835 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2066 3 34118066 34121820 Mtr5g2726 5 35584246 35585364 ECH
Mtr3g2066 3 34118066 34121820 Mtr3g2066 3 34118066 34121820 ECH