Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2065 ATGAGTTTTGTTTTTCGAGGAGCAAGAGCTGATATAGAAAATGGATTTCCTGGATTTATACCTGAGAGGCGTGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAACTCACTCACTTTTCTCGTAACAGTTCTCCTGTTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGCTAAGGATGTATGCAACATGTCAACAGCTTCAAGCACAAGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTCGGCCACACAGAACTACGGTTGCATATGCCTCCATCGATAGCACTTGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTGGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCGGATAACGTTTCTACTGCACCTTCTATGACTGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAAAATAGTTCCTCAATGCAACAAGCAACACCTTCCACTTCTGCTGAGACACAGGATAATTTAAATGCGGTTGGAAACTCAAAGGCCTCTGATGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGAGATGTACTTCGTAGCTTGCCCTGCCTGCATCAGTTTCACGCTAGTTGCATTGATCCCTGGCTGCGGCAACAGGGGACTTGCCCTGTCTGCAAATTTCGAGCAGGATCTGGGTGGAATGACAGTGGACATAATGATATTGCGGACATGGTTTGA 816 0.462 MSFVFRGARADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQNSSSMQQATPSTSAETQDNLNAVGNSKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWNDSGHNDIADMV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2065 271 CDD RING-H2_PA-TM-RING 210 252 - -
Mtr3g2065 271 PANTHER TARGET OF ERK KINASE MPK-1 1 266 - -
Mtr3g2065 271 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Mtr3g2065 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 266 - -
Mtr3g2065 271 MobiDBLite consensus disorder prediction 172 203 - -
Mtr3g2065 271 Pfam Ring finger domain 210 252 IPR001841 -
Mtr3g2065 271 SUPERFAMILY RING/U-box 204 255 - -
Mtr3g2065 271 MobiDBLite consensus disorder prediction 171 203 - -
Mtr3g2065 271 SMART ring_2 211 251 IPR001841 -
Mtr3g2065 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 256 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2065 Mtr-Chr3 34111954 34116907 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2065 1 271 C3H Transcription Factor Family AT3G55530 77.455 8.84e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2065 K16283 - gmx:100777936 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2065 3 34111954 34116907 Mtr3g2065 3 34111954 34116907 ECH