Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2063 ATGATTCGTTTCTGGCAGAAGAAACAGGATAATTCAAATGCGGTTGGAAACTCAAAAGCCTCTGGTGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGAGATGTACTTCGTAGCTTGCCCTTCCTGCATCAGTTTCACGCTAGCTGCATTGATCCCTGGTTGCGGCAACAAGGGACTTGCCCTGTCTGCAAATTTCGAGCAGGATCTGGGTGGAATGACAGTGGACATAATGATATTGCGGACATGGTTTGA 264 0.4659 MIRFWQKKQDNSNAVGNSKASGDELTCSVCLEQVNVGDVLRSLPFLHQFHASCIDPWLRQQGTCPVCKFRAGSGWNDSGHNDIADMV* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2063 87 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 6 82 - -
Mtr3g2063 87 SMART ring_2 27 67 IPR001841 -
Mtr3g2063 87 SUPERFAMILY RING/U-box 21 71 - -
Mtr3g2063 87 CDD RING-H2_PA-TM-RING 26 68 - -
Mtr3g2063 87 Pfam Ring finger domain 26 68 IPR001841 -
Mtr3g2063 87 MobiDBLite consensus disorder prediction 1 22 - -
Mtr3g2063 87 ProSiteProfiles Zinc finger RING-type profile. 27 68 IPR001841 -
Mtr3g2063 87 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 73 IPR013083 -
Mtr3g2063 87 PANTHER TARGET OF ERK KINASE MPK-1 6 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2063 Mtr-Chr3 34104803 34106094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2063 6 87 C3H Transcription Factor Family AT3G55530 64.286 3.46e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2063 K16283 - gmx:100777936 157.918