Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2038 ATGGACACTCCTCATTCACCTTCCTCCTGTTCCTCCTCCTCCTCCAATTATTCATGGGAAGGAGGACAAGCTACCGACACAATTATTTTAGAAGCTGAAGAGCCGCAAACGCCGTTAGCCGTCCGTCGTGCTCTTCAGCTTCTTAAATCCGGCGTGCCGGAGTTGCGGCTTCAAGCCGCACGTGATATAAGGAAACTCACGAAAACATCTCAGAGGTGTCGGCGTCAGTTGTCTGAAGCTGTCGGTACGCTTGTTTCTATGCTCCGAGTCGACTCGGTTGAGTCTCATGAACCGGCTCTTCTTGCTTTGCTTAATCTCGCCGTCAAAGATGAAAAAAATAAAATCAATATCGTGGAGGCTGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCAGAAAATCTAAATCTGCAGGCTTCTGCAGCTGCAGCTTTGCTCACACTATCTGCCTCTTCAATCAACAAACCAATTATTAGTGGTTGTGGCGCCATTCCCCTTCTTGTCGAGATTCTTAGAGACGGAAGCCCGCAGGCAAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACATACCCTAATAATCTTAGCATTATTCTCGAAACAAATCCAATCCCTTACATAGTTGATATCCTCAAAACATGCAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAACCCTTGGTGGATTATGATGAATGCAGAACCGCATTGACATCCGAGGAAGGTGGTATTCTTGCAGTTGTGGAGGTTCTCGAAAACGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAACACTATTGACAATGTGCCAAAGCGATCGATGTAAATACAGGGAACCGATTCTTAGAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTTCAAGGAACACCGAAGTCTCAAACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATCCAACCGGACACTCTTGAGAATATAGTATGCAACATCATATCTCAGATTGACGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCACTCGTATGCACCCCAAGTGATCTCCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTTTAAGTAA 1188 0.4478 MDTPHSPSSCSSSSSNYSWEGGQATDTIILEAEEPQTPLAVRRALQLLKSGVPELRLQAARDIRKLTKTSQRCRRQLSEAVGTLVSMLRVDSVESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSENLNLQASAAAALLTLSASSINKPIISGCGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLSIILETNPIPYIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTALTSEEGGILAVVEVLENGTLQSREHAVGTLLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSFK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2038 395 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 26 378 - -
Mtr3g2038 395 PANTHER U BOX DOMAIN-CONTAINING 26 378 - -
Mtr3g2038 395 SMART arm_5 110 150 IPR000225 GO:0005515
Mtr3g2038 395 SMART arm_5 151 191 IPR000225 GO:0005515
Mtr3g2038 395 SMART arm_5 235 276 IPR000225 GO:0005515
Mtr3g2038 395 SMART arm_5 69 108 IPR000225 GO:0005515
Mtr3g2038 395 Pfam Armadillo/beta-catenin-like repeat 154 190 IPR000225 GO:0005515
Mtr3g2038 395 Pfam Armadillo/beta-catenin-like repeat 111 149 IPR000225 GO:0005515
Mtr3g2038 395 SUPERFAMILY ARM repeat 41 345 IPR016024 -
Mtr3g2038 395 Gene3D - 26 377 IPR011989 -
Mtr3g2038 395 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 204 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2038 Mtr-Chr3 33778014 33782062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2038 41 318 U-box Gene Family AT2G23140 33.214 1.45e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2038 - - gmx:100809684 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2038 3 33778014 33782062 Mtr5g2698 5 35209070 35212562 PCT