Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2001 ATGCGTCCACCAATGAGGATAGTTAACTATCGAGTAGGAGACCTAGTTGAAGTATGCATCAAAGATGAAGGGTTTTGGGGCTCGTACTTTGAGGCCAAAATTGTTGCATGCCTCGAGAATGGAGAATATGTGGTTCGTTACAAGAACCTTCTTGAGAATGATGAATCTGGACCTCTCGAGGAGACACTTTTATCAAAGGACCTTCGTCCAATACCACCATCTGTCCAAAATCCTTCCGCGTTCCAACTCAACCAAAAGGTTGATGTTTTCTGCAATGATGGATGGTGGTTAGGGAAAATCACTAGCAAGAAGGTCTTCAGGCGAAACCATTATTACATTTGGGTGTACTTTCCCACTATATCTATAAGGAGGTTATGCCGTTGTGATCAGATCCGAGTTCATCATGAGTTGTCTGGAGGAGACTGGATCACAAGATCTTAA 441 0.4308 MRPPMRIVNYRVGDLVEVCIKDEGFWGSYFEAKIVACLENGEYVVRYKNLLENDESGPLEETLLSKDLRPIPPSVQNPSAFQLNQKVDVFCNDGWWLGKITSKKVFRRNHYYIWVYFPTISIRRLCRCDQIRVHHELSGGDWITRS* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2001 146 PANTHER - 9 144 - -
Mtr3g2001 146 Pfam Agenet domain 13 73 IPR008395 -
Mtr3g2001 146 SMART agenet_At_2 79 139 IPR014002 -
Mtr3g2001 146 SMART agenet_At_2 8 76 IPR014002 -
Mtr3g2001 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2001 Mtr-Chr3 33133882 33134392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2001 22 98 PHD Transcription Factor Family AT5G58610 30.303 4.63e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2001 - - mtr:MTR_4g079980 174.096