Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2000 ATGGCTTCTTCCTTGGATATTTCCCTTGATGATAGAATTAAGAGCAGAAGTAACAGAGGCAGGGGCAGAGGACGTGGCAAAGCCCTTTCTGGCCGTGGAAGTGGGACTCTAGGAGGTGGAAGGAGGACAGGTGCTGTTAATGGTAGAAGGACTAGTAATGGTGGAAGAACTGGTGCTGTTCGTAGAGGCCCACTTAATGTCAACACTCGCGCGTCATCTTATGCTATTGCCAAGTCTATTCGCAGACCCAAGACTCTTGCATGGCAGAGTGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATTCAAGGAGTAGAAGCTGACACTAAGTTGTATGTTTCCAATTTGGATCGAGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGGGAGTTGAAGCGCTATGCGGTTCATTATGACAAAAATGGACACCCAACTGGTTCAGCTGAAGTTGTCTACAATAGAAGAAGTGATGCATTTGCTGCTCTGAAACGATACAACAATGTGCTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGAACAAATTCAGCATTGCCTGTGACTGCACGGGTGAATGTCTCTTCAATGAATGTCTCTGCAATGAATGGACAGAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGTCGAGGTGGAGGTCCTGCCATGCTGAATCGTGGTGCAGGTTGGGGGCGTCGTGGTGGCTCAAGGGGTGGGAGCGGGAGCATGCGTGGACGTGGTCGAGGCCGTCCTGGCAGGGGTGGAGGTCGAGGTCGTGGAAGAAAGGATGGAGTTGAGAAGTCAGCTGAGCAGCTTGACAAGGAACTGGAGACCTATCACGCAGAGGCTATGCAAACATGA 876 0.4943 MASSLDISLDDRIKSRSNRGRGRGRGKALSGRGSGTLGGGRRTGAVNGRRTSNGGRTGAVRRGPLNVNTRASSYAIAKSIRRPKTLAWQSDLFEDSLRAAGIQGVEADTKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSALPVTARVNVSSMNVSAMNGQRKRTVVMTPRGGRGGGPAMLNRGAGWGRRGGSRGGSGSMRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMQT* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2000 291 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 291 - -
Mtr3g2000 291 MobiDBLite consensus disorder prediction 215 291 - -
Mtr3g2000 291 CDD RRM_THOC4 109 183 - -
Mtr3g2000 291 SMART FoP_duplication_2 220 291 IPR025715 -
Mtr3g2000 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Mtr3g2000 291 MobiDBLite consensus disorder prediction 1 63 - -
Mtr3g2000 291 MobiDBLite consensus disorder prediction 261 285 - -
Mtr3g2000 291 Gene3D - 102 185 IPR012677 -
Mtr3g2000 291 SMART rrm1_1 110 182 IPR000504 GO:0003723
Mtr3g2000 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 186 IPR000504 GO:0003723
Mtr3g2000 291 PANTHER THO COMPLEX SUBUNIT 4C 1 291 - -
Mtr3g2000 291 SUPERFAMILY RNA-binding domain, RBD 18 183 IPR035979 GO:0003676
Mtr3g2000 291 Coils Coil 267 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2000 Mtr-Chr3 33113300 33124375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2000 111 269 Eukaryotic Initiation Factors Gene Family AT2G23350 28.571 9.11e-10 57.4