Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1997 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGATTGAAGAAAGGACCATGGACTGCTGAGGAAGATAAAAAGCTCATCAATTTCATCCTTACTAATGGTCAATGTTGTTGGAGAGCTGTCCCTAAGCTAGCAGGGTTGTTAAGGTGTGGAAAAAGTTGCAGATTGAGATGGACAAATTACCTAAGGCCAGACCTAAAAAGAGGACTTTTATCAGAATATGAGGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGATGGTCCAAAATTGCATCTCATCTACCTGGACGAACCGACAACGAGATTAAGAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCGGTTACACACAAGTTACTTTCTAATGCAATAATTGAGCAAACTCAAACACAATCTGAACAAGAACCTCAACAACAATCTTCTTCACCTATTGAAATGGAACACAATGTTGAATTTGAGAATGACAAAAACAAGGAACCACAAAAACCAGAAACATCATTTGAGTCATCAACAATAACTGAAGCTAAAGAACAAGACCAAATTATGACACCAATTTTTGACTCAACAATGGAACTAATGAATGAGTTATTCACTGAAGAAGTTCCAATAATTATACCAAATGAAATTCTAGTTCCTTCATCTTCATCAACCACAACATCAACATCATCATCAACTTCAACTTCAAATTCATCTAACTTCCTTGAAGACTTGCTTCTCCCTGATTTTGATTGGTCCCATGATAATAATATTGAAAATAATAGTGATAATAATAATAATAATATTAATATGACATTATGGGATGATGACTTTATTAGAAGTTGGGATTTTGTGATCAATGATGATGATGATGGGGACATGAATTCAAGAGTGGTCATGGATTCAGAATCATGGGCCTATGGATTATTTTGA 936 0.3515 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKLLSNAIIEQTQTQSEQEPQQQSSSPIEMEHNVEFENDKNKEPQKPETSFESSTITEAKEQDQIMTPIFDSTMELMNELFTEEVPIIIPNEILVPSSSSTTTSTSSSTSTSNSSNFLEDLLLPDFDWSHDNNIENNSDNNNNNINMTLWDDDFIRSWDFVINDDDDGDMNSRVVMDSESWAYGLF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1997 311 Gene3D - 11 67 - -
Mtr3g1997 311 SMART sant 66 114 IPR001005 -
Mtr3g1997 311 SMART sant 13 63 IPR001005 -
Mtr3g1997 311 Gene3D - 70 156 - -
Mtr3g1997 311 CDD SANT 16 61 IPR001005 -
Mtr3g1997 311 MobiDBLite consensus disorder prediction 161 188 - -
Mtr3g1997 311 MobiDBLite consensus disorder prediction 173 188 - -
Mtr3g1997 311 PANTHER MYB TRANSCRIPTION FACTOR 1 293 - -
Mtr3g1997 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr3g1997 311 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 293 - -
Mtr3g1997 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr3g1997 311 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Mtr3g1997 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr3g1997 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr3g1997 311 CDD SANT 74 112 IPR001005 -
Mtr3g1997 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr3g1997 311 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1997 Mtr-Chr3 33077058 33079486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1997 1 311 MYB Transcription Factor Family AT5G16600 47.564 6.96e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g1997 Myb_DNA-binding 8.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1997 K09422 - gmx:100803624 446.817