Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1996 ATGGATTCTGATGATATGCACTATTCCAACGATGTTGAATCCCTCCATGACGATGACTACAGTGACGACTATGATGATGATAACAATAACAATGATGCTGCTGATGATTACGTTGATGGTGCTGATGATTCTGACGCTAAGATAACTGAGATAAATTTTTCCATATTGAACGAATCAGATATCCGGGAACAGCAGGAAGATGATATTAGTAGTGTCGCGGCAGTTCTTTCCATACCACCAGTTGCTGCAAGCATCCTACTTCGTCATTATAATTGGAATGTCAGTAATGTTAATGAAGCTTGGTTTGCTGATGAAGACGGAGTCCGAAGAAAAGTTGGTTTGTTGGAGAAGCCGGTTTGTGAGAATCATGATGCTAAAAAGCTTACTTGCGGCATCTGTTTTGAAGCTTATCGTCTTTCTAAGATTCACACTGCTTCTTGCGGTCATCCGTACTGTTTTTCATGCTGGAGAGGATATATTGGCACCTCAATCAACGATGGTCCGGGATGCTTGATGCTGAGATGTCCTGATCCCGCTTGTGGTGCTGCTGTTGATCAAGATACAATTAATCTTTTAGCATCTGCTGAAGATAAGGAGAAGTATGATCGTTATCTTGTTAGATCTTACATTGAAAACAATAAAAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCAGTTAATTTTGATGCTGGTGGTGAAAATTATGACGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAAGATGCTCACCGTCCAGTGGATTGCGACACAGTGTCGAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAATACGACCTGGATACTTGCTTACACGAAGCCGTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACAATGGATGCATGCATATGACATGTACTCAACCTTGCAGGTTTGAATTTTGCTGGCTATGCCTTGGTTCATGGTCTAACCATCTCAATTGCAATGCTTATGGAACAGCTAAACAAGATGAAACTGTAATTAGAAGAGAAATGGCAAAGAAATTATTGGAGAAGTACGCACATTATTATGAGCGGTGGGCTAGTAACAATTCTTCAAGGCAAAAAGCTCTTGCTGATCTACACCAGATGCAAACTGTTCATATGAAGAAGCTTAGTGTCATACAGTGCCAACCTGAGTCACAGCTTAAGTTCATTACCGAGGCTTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTAGCTGAGCATGAGCATGCTAAAAAGCAGCTCTTTGAGTACTTGCAAGGTGTGGCAGAATCAGGTTTGGAGAGACTTCATCAATGCGCCGAAAAGGAACTCCAAGCATTCCTCAGTGCTGAAGCCCCGTCTGAAGGATTCAACAATTTTCGCAGAAAACTGGCTGGATTGACCAGTGTGACTAAAAACTTCTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGTGATGTGGATAGTAATGAAGCAGGGAGCAGTAAGGGAAGAAGCGGAAGAGGAAAGGGGACGAATCGAGCTACCGTGTTAACTTATGATAATGAGTGGTATTGTGAGCGATGTACCTATGCAAACGTCGGATCTGCCACTGAATGCGCCATGTGCGATGAGTGGTCTTGTGAGAAATGCACGTATGCAAACGTCGGATCTGTCACTGAATGCGTGATGTGCAATCAACAGCGTCAGTGA 1734 0.4239 MDSDDMHYSNDVESLHDDDYSDDYDDDNNNNDAADDYVDGADDSDAKITEINFSILNESDIREQQEDDISSVAAVLSIPPVAASILLRHYNWNVSNVNEAWFADEDGVRRKVGLLEKPVCENHDAKKLTCGICFEAYRLSKIHTASCGHPYCFSCWRGYIGTSINDGPGCLMLRCPDPACGAAVDQDTINLLASAEDKEKYDRYLVRSYIENNKKTKWCPAPGCEHAVNFDAGGENYDVSCLCSYSFCWNCTEDAHRPVDCDTVSKWILKNSAESENTTWILAYTKPCPKCKRPIEKNNGCMHMTCTQPCRFEFCWLCLGSWSNHLNCNAYGTAKQDETVIRREMAKKLLEKYAHYYERWASNNSSRQKALADLHQMQTVHMKKLSVIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLAEHEHAKKQLFEYLQGVAESGLERLHQCAEKELQAFLSAEAPSEGFNNFRRKLAGLTSVTKNFFENLVRALENGLCDVDSNEAGSSKGRSGRGKGTNRATVLTYDNEWYCERCTYANVGSATECAMCDEWSCEKCTYANVGSVTECVMCNQQRQ* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1996 577 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 22 518 - -
Mtr3g1996 577 ProSiteProfiles Zinc finger RanBP2 type profile. 527 550 IPR001876 -
Mtr3g1996 577 SMART ibrneu5 274 328 IPR002867 -
Mtr3g1996 577 SMART ibrneu5 199 261 IPR002867 -
Mtr3g1996 577 MobiDBLite consensus disorder prediction 1 15 - -
Mtr3g1996 577 Pfam IBR domain, a half RING-finger domain 270 328 IPR002867 -
Mtr3g1996 577 Pfam IBR domain, a half RING-finger domain 199 261 IPR002867 -
Mtr3g1996 577 MobiDBLite consensus disorder prediction 1 42 - -
Mtr3g1996 577 ProSiteProfiles TRIAD supradomain profile. 126 332 IPR044066 -
Mtr3g1996 577 Gene3D - 257 501 - -
Mtr3g1996 577 SMART zf_4 529 550 IPR001876 -
Mtr3g1996 577 SMART zf_4 551 575 IPR001876 -
Mtr3g1996 577 SUPERFAMILY RING/U-box 126 211 - -
Mtr3g1996 577 SUPERFAMILY RING/U-box 199 268 - -
Mtr3g1996 577 ProSitePatterns Zinc finger RanBP2-type signature. 553 572 IPR001876 -
Mtr3g1996 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 210 IPR013083 -
Mtr3g1996 577 MobiDBLite consensus disorder prediction 16 39 - -
Mtr3g1996 577 SUPERFAMILY Ran binding protein zinc finger-like 552 576 IPR036443 -
Mtr3g1996 577 Pfam Ariadne domain 337 529 IPR045840 -
Mtr3g1996 577 ProSiteProfiles Zinc finger RING-type profile. 130 174 IPR001841 -
Mtr3g1996 577 ProSiteProfiles Zinc finger RanBP2 type profile. 549 577 IPR001876 -
Mtr3g1996 577 SUPERFAMILY RING/U-box 280 328 - -
Mtr3g1996 577 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 518 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1996 Mtr-Chr3 33059601 33061631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1996 1 551 ARIADNE family AT1G65430 62.456 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1996 K11968 - gmx:100810427 850.506