Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1995 ATGGATTCTGATGATATGCACGATGCCAACGATGTTGAATCCCTCGATGACGATTTCTACGGTGGTGAAACCGAAGATGATGATGATAATAACAATGATGCTGCTGATGATTACGTTGATGGTGCTGATAATTCTGACCTTGCTCAGAGAACTGAGATAAATTTTTCCATATTGAAAGAATCAGATATCCGGGAACGGCAGGAAGATGATATCAGGAGTGTCGCAGCAGTTCTTTCCATACCACCTGTTGCTGCAAGCATCCTACTTCGTCATTATAATTGGAATGTCAGTAATGTTAATGAAGCTTGGTTTGCTGATGAAGACGGAGTCCGAAGAAAAGTTGGCTTGTTGGAGAAGCCAGCTTATAAGAATCCTGATGCTAACAAAATGCCTAAGCTTACTTGCGGCATCTGTTTTGAAGCTTATCGTCCTTCTAAGATTCACACTGCTTCTTGTGGTCATCCGTACTGTTCTTCATGCTGGGGAGGATATATTGGCACTTCAATCAACGATGGTCTGGGATGCTTGATGCTGAGATGTCCTGATCCCGCCTGTGCTGCTGCCGTTGATCAAGATATGATTGATGCATTTGCATCTGCTGAAGATAAAAAGAAGTATGAACGTTACCTTGTTAGATCTTACATTGAAGTCAATAAAAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCAGTTAATTTTGATGCTGGTGATGAAAATTATGACGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAAGATGCTCACCGTCCAGTGGATTGCGACACAGTGTCGAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAACACGAACTGGATACTTGCTTACACGAAGCCGTGTCCCAAGTGCAAGAGATCGATTGAAAAAAACCGTGGATGCATGCATATGACATGTAGTGCACCTTGCAGATTTCAATTTTGCTGGCTATGCCTTGGTGATTGGTCAGACCATCGCGGTGCTTGCAATCGTTTTCAAGACTCTGAAAAACAGGCGGTGTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAAATCATTGGTGAAGTACACACATTATTATGAGCGGTGGGCTACAAACCAATCTTCAAGGCAAAAAGCTCTTACTGATCTACACCAGATGCAAACTGTTCATATGGAGAATCTTAGTGACATACAGTGCCAACCTGAGTCGCAGCTTAAGTTCATAACCGAGGCTTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTAGATGAGCATGAGCTTGCTAAAAAGAAGCTCTTTGAGTACTTGCAAGGTGAGGCAGAATCAGGCTTGGAGAGACTTCATCTATGTGCCGAAAAGGAACTCCAAGTATTCCTCAGTGCTGAAGGCCCCTCTAAAGAATTCAACGATTTTCGCTCAAAACTAGCTGGATTGACCCGTGTGACTAAAAACTTCTTCGAGAATTTGGTTAGGGCATTAGAGAATGGTTTAAGTGATGTGGATAGTAATGGAGCTGCTACGAGCAAAGCAAAGAGTTCAAAAAATGCTGCAGGGAGCAGTAAGGGAAGAGGAAAGGGGACAAATCGAGCTACCGTGTCCAGCAAAATAACCGTTGATAATGAGTGGTATTGTGTTGAATGTACCTATGCAAACGTCGGATCTGCCACTGCTTGCGCCATGTGCAGTGAGTGGTCTTGTGGGCAATGTACCTATGCAAACATCGGATCTGCCACAGCATGCGCGGTGTGCAATCAACAGCGTCAATGA 1800 0.4328 MDSDDMHDANDVESLDDDFYGGETEDDDDNNNDAADDYVDGADNSDLAQRTEINFSILKESDIRERQEDDIRSVAAVLSIPPVAASILLRHYNWNVSNVNEAWFADEDGVRRKVGLLEKPAYKNPDANKMPKLTCGICFEAYRPSKIHTASCGHPYCSSCWGGYIGTSINDGLGCLMLRCPDPACAAAVDQDMIDAFASAEDKKKYERYLVRSYIEVNKKTKWCPAPGCEHAVNFDAGDENYDVSCLCSYSFCWNCTEDAHRPVDCDTVSKWILKNSAESENTNWILAYTKPCPKCKRSIEKNRGCMHMTCSAPCRFQFCWLCLGDWSDHRGACNRFQDSEKQAVYDETEKRREMAKKSLVKYTHYYERWATNQSSRQKALTDLHQMQTVHMENLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLDEHELAKKKLFEYLQGEAESGLERLHLCAEKELQVFLSAEGPSKEFNDFRSKLAGLTRVTKNFFENLVRALENGLSDVDSNGAATSKAKSSKNAAGSSKGRGKGTNRATVSSKITVDNEWYCVECTYANVGSATACAMCSEWSCGQCTYANIGSATACAVCNQQRQ* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1995 599 MobiDBLite consensus disorder prediction 1 40 - -
Mtr3g1995 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 218 IPR013083 -
Mtr3g1995 599 Pfam IBR domain, a half RING-finger domain 274 332 IPR002867 -
Mtr3g1995 599 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 -
Mtr3g1995 599 SUPERFAMILY RING/U-box 132 217 - -
Mtr3g1995 599 SMART zf_4 573 597 IPR001876 -
Mtr3g1995 599 SMART zf_4 551 572 IPR001876 -
Mtr3g1995 599 MobiDBLite consensus disorder prediction 513 541 - -
Mtr3g1995 599 MobiDBLite consensus disorder prediction 1 43 - -
Mtr3g1995 599 SMART ibrneu5 204 266 IPR002867 -
Mtr3g1995 599 SMART ibrneu5 279 334 IPR002867 -
Mtr3g1995 599 CDD RING-HC_RBR_TRIAD1_like 135 185 - -
Mtr3g1995 599 Gene3D - 262 511 - -
Mtr3g1995 599 ProSitePatterns Zinc finger RanBP2-type signature. 575 594 IPR001876 -
Mtr3g1995 599 ProSiteProfiles Zinc finger RING-type profile. 135 181 IPR001841 -
Mtr3g1995 599 SUPERFAMILY RING/U-box 205 273 - -
Mtr3g1995 599 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 24 529 - -
Mtr3g1995 599 Pfam Ariadne domain 347 509 IPR045840 -
Mtr3g1995 599 ProSiteProfiles TRIAD supradomain profile. 131 338 IPR044066 -
Mtr3g1995 599 SUPERFAMILY RING/U-box 285 334 - -
Mtr3g1995 599 ProSiteProfiles Zinc finger RanBP2 type profile. 571 599 IPR001876 -
Mtr3g1995 599 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 24 529 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1995 Mtr-Chr3 33044372 33047144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1995 16 572 ARIADNE family AT1G65430 61.471 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1995 K11968 - gmx:100810427 897.116