LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g1986	ATGACGACTCGAATTGCGCCGGGTGTGGGTGCCAATCTGCTCGGCCAACATTCGGCGGAGAGAAATCAAGATGCTACTGCTTACGTCGGTAATCTCGACCCTCAGATTTCTGAGGAATTATTGTGGGAGCTTTTTGTTCAAGCTGGTCCCGTAGTTAATGTGTATGTTCCTAAGGATAGAGTCACTAATCAACATCAAGGTTATGGATTTGTTGAATTCCGCAGCGAAGAAGATGCTGACTATGCTATTAAAGTACTTAACATGATTAAACTTTATGGGAAACCAATTCGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTCGGGGCAAACCTTTTCATTGGCAATCTGGATCCTGATGTAGATGAGAAGCTGTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCTAAGATCATGAGAGATCCTGACACAGGGAATTCCCGAGGCTTTGGCTTCATAAGCTATGATTCATTTGAGGCATCTGATTCGGCTATTGAGGCAATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTATCGTATGCTTATAAGAAAGACACTAAAGGCGAAAGGCACGGTACTCCCGCAGAAAGAGTTTTGGCTGCAAGTAATCCGACGGCACAGAAGAGCAGGCCTCATACTTTATTTGCAAGTGGGCCACCATCACTTCCCAATGCTCCTCAGGCTAATGGTACCATTCCTGCTCCAGTGCCACCCCGCCCCTTCGCTAATGGTGTCGCCCCCCCTCCTATTCATGTCATCCAACCACCACCTCCACAAGCCCCAGCCTTTCAGCCTATGCAGATGCCACCACCTGGACAACAAGTATGGCATCAACAACAGCAAGGTCAACCAATGATGCAACAGGGAATGCCTCCTCCAATGCAACAGTTCAGGCCACCTCACTCGATGCAGATGCCGCCGCCGCCACCTCCACAAGGTATGCAGGGACCTCCAAGGCCTCTTCCACCGCCATCAGTAATGGCAGGCCAGCAACAAGTTTGGCGACCACCACCACCACCTCAGCAACAGGGTGGACATCCTATGGGATATCCTCAGAACTCAATGCCGCCACCGCCACCTCCCAATCACCATGGAATGCGACCACCTTCAGGTTAA	1140	0.4851	MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPPSG*	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g1986	379	MobiDBLite	consensus disorder prediction	193	379	-	-
	Mtr3g1986	379	CDD	RRM2_SF3B4	111	193	IPR034159	-
	Mtr3g1986	379	PANTHER	SPLICING FACTOR 3B SUBUNIT 4	1	360	-	-
	Mtr3g1986	379	MobiDBLite	consensus disorder prediction	341	379	-	-
	Mtr3g1986	379	CDD	RRM1_SF3B4	28	100	IPR034158	-
	Mtr3g1986	379	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	112	191	IPR000504	GO:0003723
	Mtr3g1986	379	Gene3D	-	16	111	IPR012677	-
	Mtr3g1986	379	Gene3D	-	112	200	IPR012677	-
	Mtr3g1986	379	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	28	97	IPR000504	GO:0003723
	Mtr3g1986	379	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	114	184	IPR000504	GO:0003723
	Mtr3g1986	379	MobiDBLite	consensus disorder prediction	279	298	-	-
	Mtr3g1986	379	SUPERFAMILY	RNA-binding domain, RBD	25	195	IPR035979	GO:0003676
	Mtr3g1986	379	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	25	103	IPR000504	GO:0003723
	Mtr3g1986	379	MobiDBLite	consensus disorder prediction	238	276	-	-
	Mtr3g1986	379	PANTHER	TRANSFORMER-2-RELATED	1	360	-	-
	Mtr3g1986	379	SMART	rrm1_1	26	99	IPR000504	GO:0003723
	Mtr3g1986	379	SMART	rrm1_1	113	187	IPR000504	GO:0003723
	Mtr3g1986	379	MobiDBLite	consensus disorder prediction	301	333	-	-
	Mtr3g1986	379	MobiDBLite	consensus disorder prediction	208	236	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g1986	Mtr-Chr3	32912740	32918220	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g1986	16	98	Eukaryotic Initiation Factors Gene Family	AT4G34110	36.145	3.22e-06	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g1986	K12831		-	gmx:100791039	518.079