Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1985 ATGTCAACTACGGAGAGCAAGCGAGAGAAGCTAGCGGGCTTGTCTCTTGACGATATCTTAGCGAATCAACAAAGACACGGCTCTACACCGCCAAGCTCTACAACGCCAAGGCAACCACCCCCTAAAAGTCGAACCCTCATAGACATTATCAAAGACGACGAAAGCAACAAAAAAGATCGCAGATCTTGGAAAGCCTTTAAAGACAAGCTTCGGCTAAAGCGTGCTGGCTCTGCTTGGACATCATCAATTCCCATTCCAACATCCGACATCCCTATCCAAAATCCAAACAGCAGAAGCTTTTCACAATTCGGTCGTCGCAACTCAGTTCGAGTCCAAACTCATTACGACTCAGACATGTCAACACACCAAGTAGATGAGCTCGATCCATCAGATGAATCCAATGCTCCAGCTAGCAGGCCAAAATTCACTCGTGGGAGCTCAACTCGGTTCACGGCAGATTCCTCTGAGAATTCTGGCGGAGGAAATCTACGACCACAACTATCACGCAAGAATTCCACCAACGTGTCATCGGCAGATCCATTCCGAAAAGGGCGTGTAGTGACTTTTCGAGACAGCTTCGACGATGAGGAGCCCGACGATGATACCAAGCATCCAGAGACGGGGAGGGCATTATCGGCGAGAGAAGCAGTGGCGGCACAAGAAGCAGCAGAAGCTGCAGCGGAGGCTGAGGCTGAGGCCGAGGCTGCAACAGGACCTCCGACGATGTCGTTGATGGATTTGTTAGGGGAGACTGATAGAGAGATGGGGTTGGAAGGGTCAAGGTATATATTAAGTGATGAGGAAGATTTTTCTGATGATGATTATGAGGAAGGTGAAGATGATGAAGATGGGGAAAGTGCATTGGAACACACTTGTTCTATTTGCATGGTGAAGCATAAGGGTACTGCTTTGGCAGCTTGTGGCCATAGTTTTTGTAGGATGTGTTCAAGGGAGCTTCTGGTTTCTAAGGGAAATTGTCCACTTTGTAATAATTTCGTTTTAGAGATTCTTGAGATTTTTTGA 1023 0.4751 MSTTESKREKLAGLSLDDILANQQRHGSTPPSSTTPRQPPPKSRTLIDIIKDDESNKKDRRSWKAFKDKLRLKRAGSAWTSSIPIPTSDIPIQNPNSRSFSQFGRRNSVRVQTHYDSDMSTHQVDELDPSDESNAPASRPKFTRGSSTRFTADSSENSGGGNLRPQLSRKNSTNVSSADPFRKGRVVTFRDSFDDEEPDDDTKHPETGRALSAREAVAAQEAAEAAAEAEAEAEAATGPPTMSLMDLLGETDREMGLEGSRYILSDEEDFSDDDYEEGEDDEDGESALEHTCSICMVKHKGTALAACGHSFCRMCSRELLVSKGNCPLCNNFVLEILEIF* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1985 340 MobiDBLite consensus disorder prediction 136 179 - -
Mtr3g1985 340 Pfam Zinc finger, C3HC4 type (RING finger) 289 332 - -
Mtr3g1985 340 MobiDBLite consensus disorder prediction 267 284 - -
Mtr3g1985 340 PANTHER OS01G0917900 PROTEIN 5 340 - -
Mtr3g1985 340 MobiDBLite consensus disorder prediction 80 118 - -
Mtr3g1985 340 CDD RING-HC 292 329 - -
Mtr3g1985 340 MobiDBLite consensus disorder prediction 73 245 - -
Mtr3g1985 340 MobiDBLite consensus disorder prediction 1 60 - -
Mtr3g1985 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 338 IPR013083 -
Mtr3g1985 340 PANTHER OS01G0917900 PROTEIN 5 340 - -
Mtr3g1985 340 SUPERFAMILY RING/U-box 291 336 - -
Mtr3g1985 340 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Mtr3g1985 340 SMART ring_2 292 329 IPR001841 -
Mtr3g1985 340 MobiDBLite consensus disorder prediction 262 284 - -
Mtr3g1985 340 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1985 Mtr-Chr3 32910880 32912735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1985 1 340 C3H Transcription Factor Family AT3G07120 36.898 2.34e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1985 - - gmx:100795449 382.489