Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1980 ATGACTAGAAAAAAGGTGAAACTCGCATTCATAATCAACGACTCCGCGAGGAAGGCGACGTTCAAGAAAAGGAAGAAAGGTCTAATGAAAAAGGTTAGTGAACTCAGCACCCTCTGTGGTATTGATGCTTGTGCTATAATCTATAGTCCATACGATCCTCAACCTGAGGTTTGGCCATCTCCTTTAGGAGTCCAAAGGGTGCTATCAAAGTTCCGAAAAATGCCTGAATTGGAACAAAGCAAAAAGATGGTGAACCAAGAGAGTTTTTTGAGGCAGCGGATTCAAAAGGCGAAAGATCAATTGACTAAACAAAGAAAGGATAATAGAGAAAAAGAAATGACTCAGTTAATGTTTCAGTACCTTAGTGCTGATCAAGTTATGCACAATATAAGCATGGTTGATTTGAATGATATGGCATGGTTGATTGATCAGTATTTGAAAGATATCAATAGGAGGGTTGAAATGTTGAGCAGGAATGGTCAAGGTCAAGGTCAAACTCAAACTCAAACTCAAATGGTAGCATCAACAATGGTGGCTAATCCAGTACCTAAGATTGAAGAGAATGGACAAGGGAGTCACGGTCAACATGTTTTGGACATGAACATGGATGTTATGCAGAAGCAACATTTTTTTATGAACTTGATGAATAATGGTGGTGGGGATCAGGCACCTCCCATGGGAAATGTCAATCCCCCAAATGGGTTTTGGCCAAATCCATTTTTCCGTTGA 729 0.4005 MTRKKVKLAFIINDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSPLGVQRVLSKFRKMPELEQSKKMVNQESFLRQRIQKAKDQLTKQRKDNREKEMTQLMFQYLSADQVMHNISMVDLNDMAWLIDQYLKDINRRVEMLSRNGQGQGQTQTQTQMVASTMVANPVPKIEENGQGSHGQHVLDMNMDVMQKQHFFMNLMNNGGGDQAPPMGNVNPPNGFWPNPFFR* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1980 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mtr3g1980 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr3g1980 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr3g1980 242 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mtr3g1980 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 - -
Mtr3g1980 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 201 - -
Mtr3g1980 242 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr3g1980 242 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mtr3g1980 242 Coils Coil 87 114 - -
Mtr3g1980 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr3g1980 242 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1980 Mtr-Chr3 32864131 32865306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1980 1 185 Type I MADS-box Gene Family AT5G48670 61.622 1.70e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g1980 SRF-TF 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1980 - - gmx:100816084 347.821