Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1979 ATGGTTTTATCATGGACTAAAAGAAACATGTTCCGCCGCACCAGCAAAGCAAAACACCAACTTCCCGGCGCCGGCGACGGTGAATTAACGGTGGAGGAAATAACAATCCCAACCAATTTCCGGTGTCCGGTGAGTCTAGACTTGATGAAAGATCCAGTAACTCTATCAACAGGAATCACCTACGACAGATTCAGCATCGATAAATGGATCGAAGCCGGAAACAAAACTTGCCCAGTTACAAATCAAAAACTTTCAACCTTCGAAATCACACCAAATCACACCATAAGAAAAATGATTCAGAGTTGGTGTGTTGAGAATAGTTCTTATGGGATTGAGAGAATTCCAACACCTCGTATACCAGTTTCCGGGTACGAGGTTAATGAGGTTTGTACTAGGTTGTTGTCGGGTTGTAGAAATTTGGATGAGAAAAAGTGTGTTGAGTTTGTTGGAAAGATTAAGATTTGGTGGAGAGAGAGTGAGAGGAATAAGAGGGTTATAATTGGAAATGGAGTTTCTTCTGTTTTAGCTACGGTTTTTGATTCTTTTTCATGTGTTTCTTTTGAGGAACATGTTGTTGTTTTGGAGGAGGTTTTGGAGATTTTAACATGGATTGTTAAAACTTCTTTTGGTGATTCGAAAACGAAGATGTGTTTATCGTCTTCGTCTTTGAATTGTTTGGTTTGGTTTTTAGATGGCAAAGATTTAGGTGCAAGACAAAATGCTGTTTTGTTGCTTAAAGAAATGAATGTTGAGGAGTTATCAAGAATTGAAGGTGTTGTTGAGGGTTTGGTTAAGATTGTTAAGGAACCAATTGGGTCAAGTGCTACAAAAGCATGTTTGACCACAATTTTCAAGTTGGTTTCATCGGCGAAAAATAGAGATGAAATTAGTGAAAGGTTTGTTGAATTGGGTTTGGTTTCATTTTTGCTTGAAACAATTGTTGATGGAGAAAAAGGGATATGTGAGAAAGCACTTGGTGTGTTGGATTGTTTATGTGATTGCAAGAAAGGGAAAGAGGTTGTTCAAACGAACGCTTTAGCTTTGCCTCTTGTGATTAAGAAGCTTTTGAGGGTGTCTCCTTTGGCATCTAGTTTTGCTGTTGGGATTGTTAGGAAGATACTATGTGAGAAGAAGGAAGAAAGAGTTTTGATTGAGGCAATTCAACTTGGTGCTTTTCAGAAACTTTTGGTTATGTTGCAAGTTGGGTGTGAGGAGAAAACAAAGGAGAATACTACTGAGTTGTTGAAATTGTTGAATGGTTATAGAAGCAAAGCTGAATGTGTTGATAATTCATTAGATTTCAAGTATCTCAAGAACTAA 1320 0.3795 MVLSWTKRNMFRRTSKAKHQLPGAGDGELTVEEITIPTNFRCPVSLDLMKDPVTLSTGITYDRFSIDKWIEAGNKTCPVTNQKLSTFEITPNHTIRKMIQSWCVENSSYGIERIPTPRIPVSGYEVNEVCTRLLSGCRNLDEKKCVEFVGKIKIWWRESERNKRVIIGNGVSSVLATVFDSFSCVSFEEHVVVLEEVLEILTWIVKTSFGDSKTKMCLSSSSLNCLVWFLDGKDLGARQNAVLLLKEMNVEELSRIEGVVEGLVKIVKEPIGSSATKACLTTIFKLVSSAKNRDEISERFVELGLVSFLLETIVDGEKGICEKALGVLDCLCDCKKGKEVVQTNALALPLVIKKLLRVSPLASSFAVGIVRKILCEKKEERVLIEAIQLGAFQKLLVMLQVGCEEKTKENTTELLKLLNGYRSKAECVDNSLDFKYLKN* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1979 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 113 IPR013083 -
Mtr3g1979 439 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Mtr3g1979 439 SUPERFAMILY RING/U-box 28 112 - -
Mtr3g1979 439 PANTHER WDSAM1 PROTEIN 16 439 IPR045185 GO:0061630
Mtr3g1979 439 SUPERFAMILY ARM repeat 167 405 IPR016024 -
Mtr3g1979 439 Gene3D - 125 422 IPR011989 -
Mtr3g1979 439 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Mtr3g1979 439 CDD RING-Ubox_PUB 40 82 IPR045210 -
Mtr3g1979 439 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 16 439 - -
Mtr3g1979 439 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1979 Mtr-Chr3 32859852 32861523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1979 33 438 U-box Gene Family AT5G37490 46.024 2.06e-111 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1979 - - gmx:548086 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1979 3 32859852 32861523 Mtr5g2636 5 34390517 34392200 PCT