Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1978 ATGAAACCAATTTTTGATCTTGAAGTAGAGGCCACAGAAGAATATGAATCTGATGTTAGTAGCCATGTTGCTTCCACTATATCCACCCACCAAATTGAAACCTCTACAGGTTCCTATAGTAACAGCCTTTCCAATTCAGATTCCATCTCACTGGACTTAACACTCAATTTCAACAACAATGACTTGGTTGTTCGAGATTCAACAGGAATCTCATTCTCAAGCACCAGTGAGAGCAGCAATGAACTTACCATCCAAAGAGTTTTCTCTTGCAATTACTGTCGGCGCAAATTTTACAGCTCTCAGGCACTTGGTGGTCATCAAAATGCACACAAGAGAGAAAGAACATTAGCAAAGCGAGCTATGCGAATTGGACTATTCACTGAGAGGTATGCATGTCTTGCATCTCTGCCTCTCAATGGTTCTTTCAGGGCATTAGGTATAAAGACACACTCTTCACTACACCATGGTTTTTCGCCGCCAACAATAAGGCCTAGTCCTGAGATAAAAAGCAATGTAAGATTCAAACAAGGATCTATCGGTCATCCGATATTCTTGGAGGACGATGAGACAGAACTGATGTGGCAAGGTAGTTTCCATCAGGTTACTAAGGGAGGTAGTAATACTCATCAGAGTTCAAATATGTGTTTTAGTGAGGTGAATGTGAAACCATTGGTTGACATTGAGAATTCAGCACCTGAATTAACATTGAAACTTTGA 717 0.4059 MKPIFDLEVEATEEYESDVSSHVASTISTHQIETSTGSYSNSLSNSDSISLDLTLNFNNNDLVVRDSTGISFSSTSESSNELTIQRVFSCNYCRRKFYSSQALGGHQNAHKRERTLAKRAMRIGLFTERYACLASLPLNGSFRALGIKTHSSLHHGFSPPTIRPSPEIKSNVRFKQGSIGHPIFLEDDETELMWQGSFHQVTKGGSNTHQSSNMCFSEVNVKPLVDIENSAPELTLKL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1978 238 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 238 - -
Mtr3g1978 238 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Mtr3g1978 238 Gene3D Classic Zinc Finger 66 130 - -
Mtr3g1978 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Mtr3g1978 238 SUPERFAMILY beta-beta-alpha zinc fingers 85 115 IPR036236 -
Mtr3g1978 238 PANTHER ZINC FINGER PROTEIN JAGGED 1 238 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1978 Mtr-Chr3 32841354 32844042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1978 1 238 C2H2 Transcription Factor Family AT1G66140 42.164 1.93e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g1978 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1978 - - mtr:MTR_3g065020 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1978 3 32841354 32844042 Mtr5g2633 5 34333842 34336471 PCT