Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1963 ATGGTTCTCTCAAAGACAGCCTCCGAGTCTGATGTCTCTGTCCACTCAACCTTTGCTTCTCGCTATGTCAGAACTTCACTTCCTAGATTCAAGATGCCAGAGGAGTCTATACCAAAGGATGCAGCATACCAAATAATAAACGATGAATTGATGCTTGATGGAAACCCTAGATTGAATTTGGCATCCTTTGTGACAACATGGATGGAGCCTGAGTGTGATAAACTCATCATGGCTTCCATTAACAAGAACTACGTTGACATGGATGAATACCCAGTCACCACTGAGCTACAGAATCGGTGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTTGAAGAGAATGAGGCTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCTATAATGTTAGCTGGATTGGCATTCAAAAGGAAGTGGCAGAACAAAAGAAAACAAGAGGGAAAGCCTTATGACAAACCTAACATTGTCACTGGAGCCAATGTCCAGGTTTGTTGGGAGAAATTTGCAAGGTACTTTGAAGTGGAATTGAAAGAGGTGAAGCTAAGTGAAGGATACTATGTAATGGACCCTGCAAAAGCTGTGGAATTGGTAGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTCGAAGATGTTAAACGCTTAAACGATCTCCTTGTTGAAAAGAATAAGGAAACTGGATGGGACACTCCTATTCATGTGGATGCAGCTAGTGGTGGCTTCATTGCTCCATTTATTTATCCAGAACTTGAGTGGGATTTCCGCTTACCATTGGTGAAGAGCATCAATGTTAGTGGTCACAAATATGGTCTTGTCTATGCTGGAATTGGTTGGGCTATTTGGAGAAGCAAGGAAGATTTGCCTGAAGAACTCATCTTTCACATCAACTATCTAGGAGCTGATCAACCTACCTTTACTCTCAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAATACTACCAACTAATACGTCTTGGTTATGAGGGGTATAAAAATGTGATGGAGAATTGTAGAGACAACATGATAGTACTAAAAGAGGGACTTGAAAAAATGGGGCGCTTCAACATAGTGTCGAAAGACGACGGTGTACCTTTGGTGGCCTTCACATTGAAGGACCACACAAACTTTGATGAATTTCAAATCTCCGATTTGTTGAGGCGCTTCGGATGGATTGTTCCAGCATACAGCATGCCCCCGGATGCGCAACACATAACCGTTTTACGCGTTGTCATTAGGGAGGATTTCTCAAGGACTTTAGCAGAGCGCCTTGTAGCTGATATAGAGAAAGTGTTGCACGAGCTTGATTCACTTACTGCGAAGATAAAGATGTTAAGTGGCACTAGTAGTGTTACAGTTCATGAAGTTGTGAAAGACAATGGTCAAGTAGTGGTTGCTAAAAAGAGTGCTTTGGAGACTCAGAGAGAAATTACTGCGATTTGGAAGAAGTTTGTGTTGGATAGGAAGAAGCTGAATGATAAGATGAATGGTGTTTGCTAG 1527 0.4224 MVLSKTASESDVSVHSTFASRYVRTSLPRFKMPEESIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEENEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKQEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPAKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWAIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMIVLKEGLEKMGRFNIVSKDDGVPLVAFTLKDHTNFDEFQISDLLRRFGWIVPAYSMPPDAQHITVLRVVIREDFSRTLAERLVADIEKVLHELDSLTAKIKMLSGTSSVTVHEVVKDNGQVVVAKKSALETQREITAIWKKFVLDRKKLNDKMNGVC* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1963 508 Gene3D - 361 447 - -
Mtr3g1963 508 PANTHER GLUTAMATE DECARBOXYLASE 1 508 - -
Mtr3g1963 508 Gene3D - 1 65 - -
Mtr3g1963 508 Gene3D - 66 360 IPR015421 GO:0003824
Mtr3g1963 508 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Mtr3g1963 508 CDD DOPA_deC_like 59 439 - -
Mtr3g1963 508 PANTHER GLUTAMATE DECARBOXYLASE 1 508 IPR010107 GO:0004351|GO:0006536|GO:0030170
Mtr3g1963 508 Coils Coil 430 450 - -
Mtr3g1963 508 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Mtr3g1963 508 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1963 Mtr-Chr3 32683066 32687974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1963 1 508 Calmodulin-binding Proteins AT5G17330 84.510 0.0 885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1963 3 32683066 32687974 Mtr5g2618 5 34195046 34200583 PCT