Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1959 ATGGCACCTGTTTCATTGCCTCCTGGTTTTAGGTTCCACCCCACAGATGAAGAACTTGTTTCTTATTACCTCAAAAGAAAGATTAATGGCCGTAGGATTGAGTTGGAGATCATCCCTGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTGCCAGGGAAGTCATTGCTACCGGGAAAAGATTTGGAATGGTATTTTTTCAGCCCAAGAGATAGGAAGTATCCAAATGGATCAAGAACCAATAGAGCAACAAAATCTGGATATTGGAAGGCAACGGGGAAAGATCGCAAGGTGAATGCTCAGACTCGCGCCGTTGGAATGAAGAAAACCCTAGTTTACTATAGAGGAAGAGCACCACATGGATCTCGCACTGGTTGGGTTATGCATGAGTATCGTCTTGATGAAAGAGAATGTGACAATCCTTCTTCTGGCTTGCAGGATGCATATGCTCTTTGCCGTATATTCAAGAAGAGTACAGTGATTGCTCCAAAAATTGGGGAGCAATATGTTAATAATGTTGCCAGGCATGCAAATCATATTACAAGTGATCAATCATCAAGCATTGAGTTGTACTCTGAAGGAAGAGATGAAGTTATAGGGACCTCAAATTATTTGATGCCATGGGATCCAAGCACATCCCAAAACAATGGGACTAATACTCTAAATAACAATGGTGGGAATATCACAAGGGATGATGGGATTTGGACACAGTTCTTATCAGAAGACTTGCTCAGTCTTCCAATATCTTCATCATTTCCCAATTATGGATCCACACCTAATTACCCTCCATCCAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTTCTTTGCCTCCCTTGGAGGTGGAAGATTTCCCTCAAGTTGGTATGAATTCTGAGCTGAAGATGACACAATTAGTCTCAGGTTCCATGAGTGGAACTAGAAATGAAACAGATATCTTGCAGGAAATTCTATCTGTAGCTCAAGCTTCTCAAGAATTGATAAACCAATCAAACTACTCACATGCATTTGGTGGCAATGAAAATTATGCTGCTGATCATGAAAATGATTTTACTTTTATGGTTGGAAATAATTACAATCATGTGACTGATCATATGAATTCCATGAGATATATTGATGACAAAGCATGGGAAGATCCAAACACAAGATCAATTGAAATTGGGGATCTTGATAATGAATTCAAGGCTGAAAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCAAGCAATGATTTAGAGAAGAGTTTTATGGAAGAGCATCAAAAGGTTGTTCCAATTGAGGATATTTCAACCTTCAAAACAAACAGGAAAGAGAATGAGGTGCAAGTAGAATCTGAGCAACAAAATATCAACAAAGAAATCAATGATGGTAACATTGATAATTTCTCAATGGGGTTTATCAATGATAATGACACTAATGAGAATTTTATAGATGATAGTAACATTGATTATTCAAATTCTACAAGCTATGAAGTTGTTGAGGAAACAACAAAAGTTAGTCATGGAATGTTTGTTGCTACACGCCAAGTAGCAGACACATTCTTTCACCAAATAACACCTTCACAAACAATAAAAGTTCAACTCAATCCAATTCTGGAAAACAAAAAATCTATAGAGAATGCAGAAACAATGATTATACCAAAGAATCAAGGATACTCTCTCTTAAGGAAGTTTAAGGCCAATTTGATGAAGTACATGAAAAATCCATCAAAGATAATAGCAAGTGCAATTGTGTTCATATTTGCACTTTTTTTGGTGCTTTGTGTTTATTTGAAGGAGCAAGTGGAAGATATGAAACCAAAGTCAGAATATGTGAAAAGGAAATATAGCTATGGAGCTAATAGCATGAAGAAAATCATTTGGAATGAGCAAGAGAAAATTTGGTTTGTTGGTATCAAAAGTGGTAAAGGTTTTGAGGTGATCTTGAAGAAGATAGGAATTTTCCTAACTATATCTTTGGCTCTTTGTACCATGTGGGCTAACCATATGATAGTTTGTTATTGA 2019 0.3715 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRRIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNAQTRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLDERECDNPSSGLQDAYALCRIFKKSTVIAPKIGEQYVNNVARHANHITSDQSSSIELYSEGRDEVIGTSNYLMPWDPSTSQNNGTNTLNNNGGNITRDDGIWTQFLSEDLLSLPISSSFPNYGSTPNYPPSKVDIALECARMQHRFSLPPLEVEDFPQVGMNSELKMTQLVSGSMSGTRNETDILQEILSVAQASQELINQSNYSHAFGGNENYAADHENDFTFMVGNNYNHVTDHMNSMRYIDDKAWEDPNTRSIEIGDLDNEFKAERMVENLRWVGMSSNDLEKSFMEEHQKVVPIEDISTFKTNRKENEVQVESEQQNINKEINDGNIDNFSMGFINDNDTNENFIDDSNIDYSNSTSYEVVEETTKVSHGMFVATRQVADTFFHQITPSQTIKVQLNPILENKKSIENAETMIIPKNQGYSLLRKFKANLMKYMKNPSKIIASAIVFIFALFLVLCVYLKEQVEDMKPKSEYVKRKYSYGANSMKKIIWNEQEKIWFVGIKSGKGFEVILKKIGIFLTISLALCTMWANHMIVCY* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1959 672 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Mtr3g1959 672 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 405 - -
Mtr3g1959 672 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Mtr3g1959 672 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 405 - -
Mtr3g1959 672 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Mtr3g1959 672 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1959 Mtr-Chr3 32608222 32612462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1959 1 663 NAC Transcription Factor Family AT1G65910 44.541 9.41e-168 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr3g1959 NAM 6.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1959 - - gsj:114381841 945.651